Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48100 211 / 4e-70 ATRR2, IBC6, ARR5 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) AT1G74890 205 / 2e-67 ARR15 response regulator 15 (.1) AT1G19050 203 / 2e-66 ARR7 response regulator 7 (.1) AT5G62920 202 / 2e-66 ARR6 response regulator 6 (.1) AT1G59940 191 / 2e-61 ARR3 response regulator 3 (.1) AT1G10470 191 / 4e-61 IBC7, ATRR1, ARR4, MEE7 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) AT2G41310 176 / 2e-55 ARR8, ATRR3 RESPONSE REGULATOR 8, response regulator 3 (.1) AT3G57040 171 / 2e-53 ATRR4, ARR9 RESPONSE REGULATOR 4, response regulator 9 (.1) AT3G56380 162 / 4e-51 ARR17 response regulator 17 (.1) AT2G40670 162 / 8e-51 ARR16 response regulator 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004243 [exp] 311 / 6e-109 AT3G48100 220 / 2e-73 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Lus10042938 [exp] 199 / 4e-65 AT1G19050 153 / 7e-47 response regulator 7 (.1) Lus10036642 [exp] 194 / 7e-63 AT1G19050 160 / 6e-50 response regulator 7 (.1) Lus10029211 [exp] 190 / 2e-60 AT1G10470 211 / 4e-68 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10030664 [exp] 188 / 2e-59 AT1G10470 206 / 2e-65 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10030822 [exp] 186 / 7e-59 AT1G59940 201 / 2e-64 response regulator 3 (.1) Lus10039524 [exp] 169 / 9e-53 AT3G57040 222 / 2e-73 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10016334 [exp] 166 / 2e-51 AT3G57040 211 / 5e-69 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10002750 [exp] 166 / 2e-51 AT3G57040 212 / 4e-69 RESPONSE REGULATOR 4, response regulator 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G070000 [exp] 217 / 9e-72 AT3G48100 231 / 1e-77 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Potri.010G037800 [exp] 184 / 3e-58 AT1G59940 202 / 5e-65 response regulator 3 (.1) Potri.003G197466 [exp] 178 / 8e-57 AT2G41310 232 / 5e-78 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.006G041100 [exp] 179 / 1e-56 AT3G57040 273 / 4e-93 RESPONSE REGULATOR 4, response regulator 9 (.1) Potri.T124806 [exp] 177 / 2e-56 AT2G41310 232 / 6e-78 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.016G038000 [exp] 178 / 3e-56 AT2G41310 242 / 2e-81 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.019G058900 [exp] 175 / 3e-56 AT3G56380 223 / 5e-76 response regulator 17 (.1) Potri.001G027000 [exp] 173 / 1e-54 AT2G41310 203 / 2e-66 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.019G133600 [exp] 162 / 3e-51 AT3G56380 183 / 2e-60 response regulator 17 (.1) Potri.008G193000 [exp] 165 / 7e-51 AT1G59940 198 / 1e-63 response regulator 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10042153 pacid=23153526 polypeptide=Lus10042153 locus=Lus10042153.g ID=Lus10042153.BGIv1.0 annot-version=v1.0 ATGGCGGCAGTTGGTACCGATTCAATGCGGTGGAGCTTTGCAGAGGAAGTTGGGGTTTCGGGCTGTAACGGCTCTTCTTCTTCCGAGGAGTTTCATGTTC TTGCCGTCGATGATAGCATTGTTGACAGGAAATTGATTGAGCGTTTGCTCAAGAGCTCTTCTTTCAAAGTAACGGCTGTGGATAGTGGGACTAGAGCCCT GCAGTACCTTGGATTGGACGGAGACAAGGGTACCTCCTCGATTGGCTTCAATGATTTGAAGGTGAATCTCATTATGACGGATTACTCCATGCCAGGGATG ACTGGATACGAGCTGCTTAAAAAGATCAAGGAATCGTCAGCTTTCAGAGAGGTGCCGGTTGTAGTTATGTCATCAGAGAACGTCTTGACCCGTATCCATA GTTGTCTGGAGGAAGGTGCAGAAGACTTCCTGGTGAAGCCTGTGAAGAAGGCTGATGTTACGAGAATCAAAAACTTCATGGTTGAAGGGGACAAAGCTAA GTACGGCAAGCGCAGGAGCTTCAAGAGACAGATTGACGATGATGAGCTTCTATTGGCTGCTGCTGCCATGCTTGCTTCATCAGAGTCTGTTCAATCATCA CCATCTCCAAAGAAAAGCAAGCAGTAA
AA sequence Show only first row Show all	>Lus10042153 pacid=23153526 polypeptide=Lus10042153 locus=Lus10042153.g ID=Lus10042153.BGIv1.0 annot-version=v1.0 MAAVGTDSMRWSFAEEVGVSGCNGSSSSEEFHVLAVDDSIVDRKLIERLLKSSSFKVTAVDSGTRALQYLGLDGDKGTSSIGFNDLKVNLIMTDYSMPGM TGYELLKKIKESSAFREVPVVVMSSENVLTRIHSCLEEGAEDFLVKPVKKADVTRIKNFMVEGDKAKYGKRRSFKRQIDDDELLLAAAAMLASSESVQSS PSPKKSKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48100		ATRR2, IBC6, AR...	INDUCED BY CYTOKININ 6, ARABID...		Lus10042153 [exp]	0	1
AT3G48100		ATRR2, IBC6, AR...	INDUCED BY CYTOKININ 6, ARABID...		Lus10004243 [exp]	1.0	0.6919
					Lus10007785 [exp]	14.6	0.5985
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10024498 [exp]	27.9	0.5816
AT3G48480			Cysteine proteinases superfami...		Lus10031938 [exp]	93.9	0.4661
AT4G25040			Uncharacterised protein family...		Lus10043192 [exp]	124.0	0.4648
AT4G02610			Aldolase-type TIM barrel famil...		Lus10014725 [exp]	160.7	0.4726
AT1G67623			F-box family protein (.1)		Lus10030128 [exp]	162.1	0.4400
					Lus10021874 [exp]	162.2	0.4650
AT4G03220			Protein with RNI-like/FBD-like...		Lus10018509 [exp]	199.4	0.4543
AT3G54310			unknown protein		Lus10004782 [exp]	199.8	0.4346

Compare expression of checked genes

Lus10042153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.