Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70140 355 / 5e-115 ATFH8 formin 8 (.1) AT1G59910 331 / 3e-104 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G24150 281 / 4e-87 ATFH4, FH4 formin homologue 4 (.1) AT3G25500 245 / 9e-72 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT3G05470 234 / 2e-68 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G67470 229 / 2e-66 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT4G15200 223 / 4e-65 AFH3 formin 3 (.1.2) AT2G43800 224 / 1e-64 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G54650 213 / 1e-60 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT5G48360 169 / 2e-45 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004244 [exp] 782 / 0 AT1G70140 396 / 6e-130 formin 8 (.1) Lus10029212 [exp] 356 / 7e-119 AT1G70140 491 / 6e-168 formin 8 (.1) Lus10010724 [exp] 308 / 4e-99 AT1G70140 442 / 2e-147 formin 8 (.1) Lus10004505 [exp] 253 / 1e-75 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10019298 [exp] 250 / 9e-74 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011524 [exp] 244 / 1e-71 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10029897 [exp] 235 / 4e-69 AT3G05470 618 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10025195 [exp] 234 / 3e-68 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10008739 [exp] 233 / 4e-67 AT5G67470 711 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G069800 [exp] 406 / 2e-134 AT1G70140 484 / 3e-160 formin 8 (.1) Potri.010G037900 [exp] 361 / 5e-117 AT1G70140 488 / 4e-162 formin 8 (.1) Potri.008G192900 [exp] 353 / 6e-114 AT1G70140 499 / 2e-166 formin 8 (.1) Potri.007G119900 [exp] 248 / 1e-73 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G140200 [exp] 246 / 2e-72 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.013G017900 [exp] 240 / 2e-70 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.007G054900 [exp] 237 / 3e-69 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.002G240232 [exp] 233 / 2e-67 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.001G416100 [exp] 231 / 4e-67 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.017G009900 [exp] 231 / 4e-67 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10042154 pacid=23153604 polypeptide=Lus10042154 locus=Lus10042154.g ID=Lus10042154.BGIv1.0 annot-version=v1.0 ATGGCGAATAATCCTGATCATTCCGTTGTTTGGGATGAAATTGAAGACGGCTCCATCAGGTTCGAGGACGGAGAGATCGAAGCCTTATTCGGATACAAGA AAGGCAAGAATTCCAGAAGCTCATCAGAAAAGCATCAACACATCGCGGAAAGTAATTCAAGCAACAGAAGAGGAAGCGCTGCTCAATCCCCGAATAGCGG TCCGATCTTCATCCTGGATCCTAGGAAGTCCCTGAACGCGGCTATAGTTCTGAAGTCATTAGGAACGAGCCAGACGCAAATCCTGACGGCAATCGAGGAA GGCCAAGGGATTCGTCAAGAAGTCCTCGAAAAGCTGGCCAGGATTTCGCCTACGAAAGAGGAATCCGCAAGGATTCTTCAGTTCGGTGACGATCCGGCTA GACTTGCAGATGCGGAATCCTTTTTGTACAACATTCTGAAAGCCGTCCCTTCGGCTTTCCTCCGAATAAACGCAATGCTCTTCAAGTTAAGCTACAGTAC CGAAATCAGGAACCTGAAGGGTTCATTGAAAACGATAGAATTGGGTTGCCAGGAGCTCAGGACACGTGGATTGTTCCTGAAGCTTCTGGAAGCCATCCTG AAGGCAGGTAACAAGATGAATGCAGGAACTTCGCGAGGAGATGCCAAAGGGTTTAACCTTGCAGCCTTGAGAAAGCTCTCTGATATTAAAAGCTCCGACG GTAAGACCACGCTGCTCCATTTTGTAGTGGAGCAGGTGGTCCAATCAGTGGGCAAACGACAAATCCTGAACCACAAGGGAAACCTGAAAGAGGAAAAGAT GAAAGAAGAGTTTGTATCTTTAGGGTTGAAATCGATGCGGAATCTGGGATTGGAATTCTCGAACGTGAAGAAGGCAGCGGCAATCGAGAGCAACGAATTC GTCAATGCTTGCTCGGTTCTGGAATCGAGGCAAGGGGAAATAATTCGATTCCTTTCAGGGTGCGGAGAGGAGGAAATGAGATCGGGTCGATTCGTGAGGG AAATGGAGAGGTTTTTGGAAAGGAGCGTGGAGGAGATGAAATTGGTGAGAGAAGAGCAAAGGAGAGTGATGGAGGTTGTGAAGAGAACGACGTCGTACTA CCAGGCCGGAAGAAGCAGAGGAAACAGCGGGGGAGAAGAGCAGCAGCCGCTTGAGCTGTTTGTAATTGTTAAGGATTTCCTGGAAATGGTGGATCAGGTT TGTACAGACATTTCCCGGAGTTGTAGTCTGAGGAAGAAGAAGAAGGGTGGAACGATGTCGGGTTTTCCGCCGGCGATTGGGAATACTAGTAGTAGTTCAG GGAAACTCCAGCAACGTCCTCCACGGAGTTTTCAGTTTCCTTCTGCAGCCATGGCTGCTGATGAATCAGATGAAGATGATGATGACTTCTGA
AA sequence Show only first row Show all	>Lus10042154 pacid=23153604 polypeptide=Lus10042154 locus=Lus10042154.g ID=Lus10042154.BGIv1.0 annot-version=v1.0 MANNPDHSVVWDEIEDGSIRFEDGEIEALFGYKKGKNSRSSSEKHQHIAESNSSNRRGSAAQSPNSGPIFILDPRKSLNAAIVLKSLGTSQTQILTAIEE GQGIRQEVLEKLARISPTKEESARILQFGDDPARLADAESFLYNILKAVPSAFLRINAMLFKLSYSTEIRNLKGSLKTIELGCQELRTRGLFLKLLEAIL KAGNKMNAGTSRGDAKGFNLAALRKLSDIKSSDGKTTLLHFVVEQVVQSVGKRQILNHKGNLKEEKMKEEFVSLGLKSMRNLGLEFSNVKKAAAIESNEF VNACSVLESRQGEIIRFLSGCGEEEMRSGRFVREMERFLERSVEEMKLVREEQRRVMEVVKRTTSYYQAGRSRGNSGGEEQQPLELFVIVKDFLEMVDQV CTDISRSCSLRKKKKGGTMSGFPPAIGNTSSSSGKLQQRPPRSFQFPSAAMAADESDEDDDDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70140		ATFH8	formin 8 (.1)		Lus10042154 [exp]	0	1
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Lus10038349 [exp]	3.5	0.7598
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10041918 [exp]	5.7	0.7687
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10041393 [exp]	7.2	0.8109
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10019449 [exp]	11.8	0.7595
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10015542 [exp]	16.2	0.7637
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10036212 [exp]	16.9	0.7518
AT2G43970			RNA-binding protein (.1.2)		Lus10027080 [exp]	17.7	0.7511
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Lus10043180 [exp]	19.9	0.7372
AT1G76060		EMB1793	EMBRYO DEFECTIVE 1793, LYR fam...		Lus10005621 [exp]	20.3	0.7644
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10017883 [exp]	20.8	0.7015

Compare expression of checked genes

Lus10042154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.