Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61820 409 / 3e-140 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004249 [exp] 728 / 0 AT5G61820 435 / 2e-150 unknown protein Lus10003210 [exp] 478 / 1e-167 AT5G61820 431 / 1e-148 unknown protein Lus10017316 [exp] 475 / 1e-166 AT5G61820 436 / 1e-150 unknown protein Lus10033851 [exp] 326 / 2e-107 AT5G61820 316 / 6e-103 unknown protein Lus10015933 [exp] 311 / 5e-102 AT5G61820 306 / 7e-100 unknown protein Lus10017315 [exp] 147 / 1e-42 AT5G61820 130 / 1e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G108600 [exp] 499 / 1e-175 AT5G61820 477 / 3e-166 unknown protein Potri.015G108500 [exp] 466 / 1e-162 AT5G61820 470 / 2e-163 unknown protein Potri.015G108800 [exp] 434 / 5e-150 AT5G61820 468 / 7e-163 unknown protein Potri.015G108700 [exp] 432 / 2e-149 AT5G61820 453 / 5e-157 unknown protein Potri.012G110300 [exp] 330 / 5e-111 AT5G61820 366 / 9e-125 unknown protein Potri.012G110600 [exp] 162 / 1e-47 AT5G61820 153 / 4e-44 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07712 [flax] [poplar] SURNod19 Stress up-regulated Nod 19
Representative CDS sequence Show only first row Show all	>Lus10042158 pacid=23153865 polypeptide=Lus10042158 locus=Lus10042158.g ID=Lus10042158.BGIv1.0 annot-version=v1.0 ATGAAATTACAGTATGGCGTCTACTTGCTGCTGTTACTTATCATTACATCAGTACTTCATTCCCAAGGAGTTTCTGGAAACAGGCACAGCATAATCAAGT CGGCCACTTTTCTGTCACCCAAGTTTGTGCTTGGGCCAGGATCTGTGCAGAACAATTTCTTCTACAACGTCGATTTCCCTAGAGGTCACATTGGGATCAA GAGCTTTGATGCTGAAGTTGTAGATTCGAGTGGAAATTCTATCCCCCTTCACGAAACATATCTTCATCACTGGCTTGTCCAGAGATACCATGTCCCTAAG GACAAGGCTAGAGATCCTAATCTTCGTCGGAAGGATGTTGTATCTGTAAGGAATAACGGCATCTGTCAGAACGGAGTTCTTGGCCAGTCGAATGGTCTTG GCTCAGAAACTCGAAGAACCTCTACATATGTTCCGGATCCTTACGCAATTGAAGTTGGCAATCCATTTGAAATTCCGGATGGTTATGAGGAAGGATGGGT GCTTAATATTCATGCAATTGATACGCGTGGTGCTCAAGACCGGTTGGGATGCACTGAGTGTCTATGTGAAGTATACAATACTTCAAGGATTGGTCCTTAT TTGCCTAAAAACTATAGAGGTGGTTTGTTTTGTTGCTTCGGGCACACGGAATGCAAGCTCAAACAAGGTTTTGAGGCTCCAAGGAGAATCCTTTATCTTC GATACACGGTGAAGTGGGTTGATTGGGACAGTGGGGTTCTCCCAGTTAAGATCTATATATTCGATGTCACCGATACTGGGGCTCCTGGGACGTGTGTAAA TGTGAAAAAGGAAAACTTTAGGATGCCATCTAGTGGCTATATTATCTACAGCGTTGCCCATCAACACACTGGAGGGATTGGTTCAACTCTTTATGGAAAG GAAGGACGTGTTATATGCCATTCAGAACCAATCTATGGAACTGGGAATGAGGCAGGAAATGAAGCTGGTTATATTGTAGGAATGTCCACATGTTACCCAA AGATTGGATCTTTAAAGGTAGCAGCTGGAGAAGAACTAGTACTGGAATCCAAATACAATTCTTCCAGCGAGAGAGGCCATACAGGAGTAATGGGACTTTT CTACATTATGGTTGCAGACAACACTCCATCAACCTTGTCCTTTTTGCCAGCTCCTCTTCTTACCATATGTGGTGATTTCAGCTTGAACGCATGGATAGCC CCCTTAGGATTGGCAGCCGCAGTTGGTGTTGGAGTCTTCTCTTGGACGAGGAATCGACGCACTGAATATAGCTACCGCCCAATTACGCCTTGA
AA sequence Show only first row Show all	>Lus10042158 pacid=23153865 polypeptide=Lus10042158 locus=Lus10042158.g ID=Lus10042158.BGIv1.0 annot-version=v1.0 MKLQYGVYLLLLLIITSVLHSQGVSGNRHSIIKSATFLSPKFVLGPGSVQNNFFYNVDFPRGHIGIKSFDAEVVDSSGNSIPLHETYLHHWLVQRYHVPK DKARDPNLRRKDVVSVRNNGICQNGVLGQSNGLGSETRRTSTYVPDPYAIEVGNPFEIPDGYEEGWVLNIHAIDTRGAQDRLGCTECLCEVYNTSRIGPY LPKNYRGGLFCCFGHTECKLKQGFEAPRRILYLRYTVKWVDWDSGVLPVKIYIFDVTDTGAPGTCVNVKKENFRMPSSGYIIYSVAHQHTGGIGSTLYGK EGRVICHSEPIYGTGNEAGNEAGYIVGMSTCYPKIGSLKVAAGEELVLESKYNSSSERGHTGVMGLFYIMVADNTPSTLSFLPAPLLTICGDFSLNAWIA PLGLAAAVGVGVFSWTRNRRTEYSYRPITP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61820			unknown protein		Lus10042158 [exp]	0	1
AT1G21680			DPP6 N-terminal domain-like pr...		Lus10028545 [exp]	5.2	0.8257
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10002138 [exp]	7.5	0.8153
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10036629 [exp]	9.5	0.8237
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10012683 [exp]	9.9	0.8123
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032223 [exp]	11.5	0.8186
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10036394 [exp]	13.3	0.7872
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10019017 [exp]	17.0	0.8013
AT1G61930			Protein of unknown function, D...		Lus10006775 [exp]	17.2	0.8152
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025904 [exp]	18.0	0.8011
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10033754 [exp]	24.1	0.8131

Compare expression of checked genes

Lus10042158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.