Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62600 1326 / 0 MOS14 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) AT4G25650 419 / 8e-133 TIC55-IV, PTC52, ACD1-LIKE TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) AT3G44880 202 / 3e-55 PAO, LLS1, ACD1 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) AT2G24820 138 / 7e-34 AtTic55, TIC55-II, TIC55 translocon at the inner envelope membrane of chloroplasts 55-II (.1) AT1G44446 69 / 1e-11 ATCAO, CH1 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) AT1G12930 49 / 2e-05 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004250 [exp] 1592 / 0 AT5G62600 1296 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Lus10033784 [exp] 440 / 1e-136 AT4G33820 480 / 2e-160 Glycosyl hydrolase superfamily protein (.1) Lus10025415 [exp] 417 / 5e-132 AT4G25650 689 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015288 [exp] 414 / 3e-131 AT4G25650 697 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015283 [exp] 401 / 3e-126 AT4G25650 621 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10013915 [exp] 400 / 7e-126 AT4G25650 619 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025414 [exp] 394 / 2e-123 AT4G25650 592 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015284 [exp] 390 / 8e-122 AT4G25650 537 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025412 [exp] 381 / 9e-119 AT4G25650 574 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G073600 [exp] 1504 / 0 AT5G62600 1450 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Potri.015G068600 [exp] 1504 / 0 AT5G62600 1454 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Potri.003G219000 [exp] 459 / 6e-148 AT4G25650 667 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.001G005900 [exp] 429 / 2e-136 AT4G25650 731 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219400 [exp] 424 / 6e-135 AT4G25650 672 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219550 [exp] 422 / 5e-134 AT4G25650 664 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.001G005700 [exp] 392 / 4e-123 AT4G25650 634 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G218900 [exp] 388 / 2e-121 AT4G25650 639 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.004G217200 [exp] 184 / 5e-49 AT3G44880 758 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.009G004100 [exp] 165 / 5e-43 AT3G44880 612 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF08417 [flax] [poplar] PaO Pheophorbide a oxygenase CL0020 [flax] [poplar] TPR PF08389 [flax] [poplar] Xpo1 Exportin 1-like protein CL0516 [flax] [poplar] ISP-domain PF00355 [flax] [poplar] Rieske Rieske [2Fe-2S] domain
Representative CDS sequence Show only first row Show all	>Lus10042159 pacid=23153759 polypeptide=Lus10042159 locus=Lus10042159.g ID=Lus10042159.BGIv1.0 annot-version=v1.0 ATGGAAGCTCTCAGTTACGCAGGATTCTTCACTCCTTCTCCTCCAAAGAATCCACTCCATACCTCCCGCCTCTCCCATCTCAGATTCCCTTCACATCATC CCTCTCATCTCTTCCATTCAATCCATGGCAAAGCCTTGACATCCAAGCTCTTCACTTCATCACCAACATCACCATTCACACCAACAGAAACAGAGAGCAG TAGTGAGGAGAAATTCGACTGGTTTGCTCAGTGGTATCCGGTAATGCCGGTATGTGATCTGGACAAGAGAATCCCACTTGGGAAAACTGTGCTGGGTCTA GATTTGGTAGTGTGGTGGGATCGGAACGAGAATGCCTGGAAGGTTTTCGACGATATGTGCCCTCATAGATTGGCTCCACTCTCTCAAGGAAGGGTTGATC AGTGGGGGAGGTTGCAATGTGTCTATCACGGTTGGTGCTTCGATGGCTCCGGCGAATGTAAGCTCATCCCTCAGGCTCCTCTTGATGGCCCTCCGGTACA CACATCGAAGAGAGCCTGTGTAGCAGCATATCCAACTACCGTGCAGCACGACATTCTGTGGTTTTGGCCAAACAGTGATCCCAGTTTTAGAGATATCCTA TCGGTGAAAAAGCCTCCTTACATTGCAGAGCTGGATGACCCTTCATACACTAAACCAATGTTGATCAGAGAGTTCCCTTACGGGTGCGAAATCCTGACTG AAAATCTGATCGACCCTTCTCATGTTCCATATGCACATTATCAGCTACTCCCTAATGCAACACCAAAACATAAAAGGGTTGATAGAGAAGGAGGCACCCC GATTGATATGCACGTAGAAGAATTTGATATAAACGGATTTGAGATCGCTAGAGTAGGAGGAGAGAGCAAGTTTATTGCACCTTGTGTGTATTACTCTTCC GTAAGAGTGGCAGGACTTAAGGATCCATCGTACCAAACATCAGAAAATAGGGAGCTCCTTGTTTTCTTTTGCATTCCAGTTAGTCCTGGCAAGAGCAGAT TGATACTCACATTTCCAAGGAACTTTGCCGTCTGGGTAGATAGAATAGTTCCAAGATGGGTTTCTCACATGATGCAGAATCTAGTTCTTGATTCAGACTT GTGTCTTCTTCATCTGGAGGTTGCTGACAATTTGCTTCACGATGCTGCGAGCAATCTGGAAACACTTATTTTTTGTTCTCAAACCCTCAGGAGCAAGGTA CAACGAGATTTTGAAGAGCTACCTACTGAAGCTTTTCGGCCATTGCAGACTTCATTGAATACATTGGTTAAAAAATTTCATCGAGGGCCTCCAAAAGTCA GGACTCAGATCAGTATTGCTGTTGCGGCCTTGGCTGTACAAGTTCCAGCAGAGGATTGGGGAGATGGTGGTATTGTGAATTGGCTCAAGGACGAGATGAA TACTCACCCAGAGTATTTACCAGGTTTCCTGGAGTTGCTCACAGTTTTACCTGAGGAAACCTTCAATCACAAAATTGCAGCTCGTCCGGAAAGAAGACGT CAGTTTGAAAAAGAGCTTACTTCACAAATGGAAGTTGCTCTTAGCATCTTGACAACTTGTTTGAAAATAAACGAACTGAAGGAACAGGTTCTTGAGGCTT TTGCTTCTTGGTTGCACCTAAGGCATGGAATTCCAGGATCCGTGCTTGCAACTCATCCACTGGTCCATACTGCTCTTTCAAGCTTGAATTCTGAGTTTCT GTCCGAGGGGGCCGTAAATGAATTGATACACTATACAACTGCGAGACATTCTGGTGGAATTTCTGTACAGATGCCTTTGATTCAAGTGATTGTGCCTCAA GTAATGAGTTTAAAGGGGCAACTTAGAGATTCATCGAAGGATGAAGAAGATGTGAAGGCCGTTGCTCGATTATTTGCGGACTTAGGTGATTCATATGTTG AGCTTATTGCTACTGGTTCAGATGACCCGATGGTGATAGTCCATGCATTGTTGGAAGTTGCTTCGCATCCAGAGTATGACATTGCCTCCATGACCTTCAA TTTTTGGCATAATCTTCAAGTACTCTTGACCAAGAGGGATTCTTATATTTCTCACGGCAATGAGTCATCTGCTGAAGCTGAAAGAACTAGGAGACTGCAG ATTTTTCGGCCAGCTTATGAGTCACTTGTATCCCTGGTTAGCTTCCGTGTTCAATATCCACAAGATTATCAGAACCTTTCAATTGAAGATCTGAAGGAGT TTAGACAGACTAGATATGGTAATCTCATGTCTGTGGATCCAGTTAAGAGTCTTGCAAGTGGAACCACTGCGAGCCTTTACATGGTGATATCAACACATGA TGCTGAAATTTCTGAAGTGTGCTGGATCAGATTGTGGCTAAGCACTTACATAAAAGCTTTGGTCTTTGTAGCTGTTGCGGATGTGTTAATCGATGCAGCC TCAGTTCTAGGGGGTGATACCATTCTGAGAATTCTCTATTTAAAGCTAGCCGAGGCACAAGCTTGCTGGGGTAATGGACAGAGCGAGTGGCGTCCAGCAG AAGCTGCTTTATTTTGTATCAGGGCGATATCAACATATGTTTCAAAAGATGAGGCTGAAGTGATGCCTAAGATTATGTCTTTACTTTTGGAACTTCCGGA TCAGCCACAGCTACTCCAGACAGTTTGCTTGACTATTGGAGCATACTCGAAGTGGCTCGATACTGCATCAGATGGATTGGCTGTGTTGTCTTCCATAATA AAGGTTCTACTGTGTGGCATGGGTACATCTGAAGACTCAGCTGCTGCTGCAGCTGTGGCATTCCGACACATTTGTGATGATTGTCGGAGAAAGCTTTCTG GAAATTTTGATGATCTCTTCTCCATATACCACCGGGCGGTTAGTGGGGAGGGTGCGTTTAAAGTCACTGCTGATGACTCTCTGCATTTAGTTGAGGCCTT AAGTATGGTCATTACAGAACTACCTCCAGACCAAGCCAAACAAGCATTAGAAAAACTATGCTTTCCAGTGGTTGCTCCTTTACAGGAAATCATCAGTCAA GGTCCAGAACTATTTGAGAAGAAACATGCTCGTGAATTGACTGTCCATATTGATCGACTTGCATATATCTTCAGGTATGTAAATCACCCTGAAGCTGTGG CGGATGCAATACAAAGACTTTGGCCTCTACTGAAAGCAATTTTTGACCTTCGTGCTTGGGAAATGAGGACAATGGAGTCTTTGTGCCGAGCCTGTAAATA TGCGGTAAGAACTTCTGGCAGGTTCATGGGAGTTACAATCGGCGCAATGCTAGAGGAAATCCAAGGCTTGTATAGGCAACACCACCAACCGTGCTTCCTT TACCTGTCAAGTGAAGTCATAAAAATATTTGGGTCCGATCCATCCTGTGCTTCCTACCTGAAAAATTTGATCGAAGCACTCTTTACGCACACAGTGTGCC TTCTTACTAATATCGAGGACTTTACTCTTCGGCCGGATATAGCTGATGATTGCTTTCTACTAGCATCCAGATGCATGCGTTACTGTCCTCAGTTATTCAT TCCATCTCAAGTATTCCCTTCATTAGTTGATTGTGCCATGATCGGTGTCACGGTACAGCACAGAGAGGCCTCCAACTCCATATTGACATTCCTGTCCGAC ATCTTCGATCTCGGGAAATCTAGCCTCGGAGAACAGTTCTTATCAATCAGGAACAACGTCGTTGCTCCAAGAGGTCCTACCATAACCAGAATATTGATCG CTTCGTTAACTGGGGCATTACCAAGTTCTCGTATAGAAACGGTAACCTACGCTTTACTGTCACTAGCTCGTTCATTTGGGGCGACCTCGGTGGGTTGGGG GAGGGACATTGTTTCCTTAATCCCGGCAACAGCGGTGACAGATGTCGAACGCACGAGATTCTTGAAAGCATTGTCGGATGCTGCTTCAGGAGTGGATATC AACACTTTGATGGCTCCAATAGAAGAGCTGTCCGACCTCTGTCGGCGAAACCGGATGGTTCAGGAGATTGTACAAGGAGCTCTAAGGCCACTGGAGTTGA AATAA
AA sequence Show only first row Show all	>Lus10042159 pacid=23153759 polypeptide=Lus10042159 locus=Lus10042159.g ID=Lus10042159.BGIv1.0 annot-version=v1.0 MEALSYAGFFTPSPPKNPLHTSRLSHLRFPSHHPSHLFHSIHGKALTSKLFTSSPTSPFTPTETESSSEEKFDWFAQWYPVMPVCDLDKRIPLGKTVLGL DLVVWWDRNENAWKVFDDMCPHRLAPLSQGRVDQWGRLQCVYHGWCFDGSGECKLIPQAPLDGPPVHTSKRACVAAYPTTVQHDILWFWPNSDPSFRDIL SVKKPPYIAELDDPSYTKPMLIREFPYGCEILTENLIDPSHVPYAHYQLLPNATPKHKRVDREGGTPIDMHVEEFDINGFEIARVGGESKFIAPCVYYSS VRVAGLKDPSYQTSENRELLVFFCIPVSPGKSRLILTFPRNFAVWVDRIVPRWVSHMMQNLVLDSDLCLLHLEVADNLLHDAASNLETLIFCSQTLRSKV QRDFEELPTEAFRPLQTSLNTLVKKFHRGPPKVRTQISIAVAALAVQVPAEDWGDGGIVNWLKDEMNTHPEYLPGFLELLTVLPEETFNHKIAARPERRR QFEKELTSQMEVALSILTTCLKINELKEQVLEAFASWLHLRHGIPGSVLATHPLVHTALSSLNSEFLSEGAVNELIHYTTARHSGGISVQMPLIQVIVPQ VMSLKGQLRDSSKDEEDVKAVARLFADLGDSYVELIATGSDDPMVIVHALLEVASHPEYDIASMTFNFWHNLQVLLTKRDSYISHGNESSAEAERTRRLQ IFRPAYESLVSLVSFRVQYPQDYQNLSIEDLKEFRQTRYGNLMSVDPVKSLASGTTASLYMVISTHDAEISEVCWIRLWLSTYIKALVFVAVADVLIDAA SVLGGDTILRILYLKLAEAQACWGNGQSEWRPAEAALFCIRAISTYVSKDEAEVMPKIMSLLLELPDQPQLLQTVCLTIGAYSKWLDTASDGLAVLSSII KVLLCGMGTSEDSAAAAAVAFRHICDDCRRKLSGNFDDLFSIYHRAVSGEGAFKVTADDSLHLVEALSMVITELPPDQAKQALEKLCFPVVAPLQEIISQ GPELFEKKHARELTVHIDRLAYIFRYVNHPEAVADAIQRLWPLLKAIFDLRAWEMRTMESLCRACKYAVRTSGRFMGVTIGAMLEEIQGLYRQHHQPCFL YLSSEVIKIFGSDPSCASYLKNLIEALFTHTVCLLTNIEDFTLRPDIADDCFLLASRCMRYCPQLFIPSQVFPSLVDCAMIGVTVQHREASNSILTFLSD IFDLGKSSLGEQFLSIRNNVVAPRGPTITRILIASLTGALPSSRIETVTYALLSLARSFGATSVGWGRDIVSLIPATAVTDVERTRFLKALSDAASGVDI NTLMAPIEELSDLCRRNRMVQEIVQGALRPLELK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10042159 [exp]	0	1
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007388 [exp]	1.4	0.9198
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10004250 [exp]	1.7	0.9162
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	2.4	0.9228
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040891 [exp]	4.9	0.8987
AT4G01210			glycosyl transferase family 1 ...		Lus10008732 [exp]	5.1	0.8709
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001836 [exp]	7.5	0.8600
AT3G12590			unknown protein		Lus10001698 [exp]	7.7	0.8583
AT5G12400			DNA binding;zinc ion binding;D...		Lus10027346 [exp]	8.0	0.8856
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Lus10003572 [exp]	8.7	0.8972
AT5G28850			Calcium-binding EF-hand family...		Lus10029614 [exp]	11.0	0.8347

Compare expression of checked genes

Lus10042159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.