Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10430 609 / 0 PP2A-2 protein phosphatase 2A-2 (.1) AT1G59830 602 / 0 PP2A-1 protein phosphatase 2A-2 (.1.2) AT1G69960 599 / 0 PP2A serine/threonine protein phosphatase 2A (.1) AT2G42500 540 / 0 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT3G58500 539 / 0 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT4G26720 436 / 3e-154 PPX-1, EP129, EP124, PPX1 PROTEIN PHOSPHATASE X-1, protein phosphatase X 1 (.1) AT5G55260 433 / 3e-153 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) AT3G19980 375 / 2e-130 STPP, ATFYPP3, EMB2736 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) AT1G50370 372 / 4e-129 AtFYPP1 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G39840 291 / 3e-97 TOPP4 type one serine/threonine protein phosphatase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033122 [exp] 636 / 0 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Lus10036657 [exp] 628 / 0 AT1G10430 598 / 0.0 protein phosphatase 2A-2 (.1) Lus10013287 [exp] 620 / 0 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10030810 [exp] 620 / 0 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10004252 [exp] 556 / 0 AT1G69960 538 / 0.0 serine/threonine protein phosphatase 2A (.1) Lus10025174 [exp] 543 / 0 AT2G42500 619 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10039185 [exp] 539 / 0 AT2G42500 624 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10016053 [exp] 536 / 0 AT2G42500 610 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10013754 [exp] 525 / 0 AT2G42500 601 / 0.0 protein phosphatase 2A-3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G073300 [exp] 637 / 0 AT1G10430 605 / 0.0 protein phosphatase 2A-2 (.1) Potri.015G068300 [exp] 635 / 0 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Potri.008G191600 [exp] 608 / 0 AT1G10430 610 / 0.0 protein phosphatase 2A-2 (.1) Potri.010G039700 [exp] 606 / 0 AT1G10430 609 / 0.0 protein phosphatase 2A-2 (.1) Potri.003G217900 [exp] 542 / 0 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.001G007800 [exp] 541 / 0 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.016G062000 [exp] 538 / 0 AT3G58500 622 / 0.0 protein phosphatase 2A-4 (.1) Potri.006G196100 [exp] 535 / 0 AT3G58500 620 / 0.0 protein phosphatase 2A-4 (.1) Potri.011G092200 [exp] 433 / 4e-153 AT5G55260 613 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.001G358700 [exp] 430 / 5e-152 AT5G55260 609 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10042160 pacid=23153949 polypeptide=Lus10042160 locus=Lus10042160.g ID=Lus10042160.BGIv1.0 annot-version=v1.0 ATGGAGATATTGGAGATTGGCATCGGGTTGAAGGATAGTGATGAAATGGGAAGCTTTTGGGCAGAGATGGTGGTGGATGAAGGTCTGGTTGGAGAAGAAG AAGGCGAGCGGAGGAGGTCTGCGAGCAGGAGAGCGCAGGAGGAAGAGTGGGGCCAGGGTACGATGCCGTCCCACGCCGATCTGGACCGTCAGATCGAGCA CTTGATGCAGTGCAAGCCACTTTCTGAGGCCGAAGTGAAGGCTCTCTGCGAGCAGGCCAGGGCCGTCCTCGTCGAGGAATGGAACGTCCAGCCGGTCAAG TGTCCGGTGACTGTCTGCGGCGACATCCACGGCCAGTTTCACGATCTTGTCGAGCTCTTTCGAATCGGAGGAAACGCCCCTGACACGAACTACCTCTTCA TGGGCGACTATGTAGATCGAGGGTATTATTCGGTGGAGACTGTCACCCTTCTAGTCGCCTTGAAAGTAAGATATAGAGATAGGATCACAATTCTGAGAGG AAATCATGAAAGTCGTCAAATAACTCAAGTGTATGGATTCTATGATGAGTGCTTGAGAAAATATGGAAATGCCAATGTGTGGAAACATTTTACTGATCTC TTTGATTATCTACCACTTACAGCTCTGATTGAGAGTCAGGTCTTCTGCTTACATGGTGGACTTTCCCCTTCACTAGACACGCTAGACAACATTCGCTCCC TTGATCGTATCCAAGAGGTTCCGCACGAGGGTCCTATGTGCGACCTCCTATGGTCGGACCCGGATGACCGTTGCGGGTGGGGGATCTCTCCTCGTGGAGC TGGCTACACCTTTGGACAGGACATATCTCAACAGTTCAACCACACGAACGGCCTTTCTCTCATATCCAGAGCTCACCAGCTGGTCATGGAAGGTTACAAT TGGGCCCAGGACAAGAATGTGGTGACGGTGTTCAGCGCCCCGAACTACTGCTACCGGTGTGGGAACATGGCGGCCATTCTCGAGATCGGAGAGAACATGG AGCAGAACTTCCTGCAGTTCGACCCAGCTCCTCGACAGATCGAACCGGAGACGACTCGCAGAACACCCGATTATTTTTTGTGA
AA sequence Show only first row Show all	>Lus10042160 pacid=23153949 polypeptide=Lus10042160 locus=Lus10042160.g ID=Lus10042160.BGIv1.0 annot-version=v1.0 MEILEIGIGLKDSDEMGSFWAEMVVDEGLVGEEEGERRRSASRRAQEEEWGQGTMPSHADLDRQIEHLMQCKPLSEAEVKALCEQARAVLVEEWNVQPVK CPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDL FDYLPLTALIESQVFCLHGGLSPSLDTLDNIRSLDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISQQFNHTNGLSLISRAHQLVMEGYN WAQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQIEPETTRRTPDYFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10042160 [exp]	0	1
AT2G46710			Rho GTPase activating protein ...		Lus10030213 [exp]	1.0	0.8808
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Lus10026731 [exp]	2.0	0.8611
AT3G18060			transducin family protein / WD...		Lus10027252 [exp]	2.4	0.8526
AT5G15880			unknown protein		Lus10034091 [exp]	21.4	0.8017
AT3G16240		DELTA-TIP1, ATT...	delta tonoplast integral prote...		Lus10025808 [exp]	22.6	0.8124
AT3G49720			unknown protein		Lus10039648 [exp]	24.5	0.8112
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Lus10028257 [exp]	24.5	0.7402
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10014899 [exp]	26.8	0.7662
AT1G57790			F-box family protein (.1)		Lus10024904 [exp]	28.5	0.8479
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Lus10009419 [exp]	32.3	0.7944

Compare expression of checked genes

Lus10042160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.