Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49170 467 / 7e-157 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 299 / 8e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15130 294 / 5e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G24000 291 / 5e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 287 / 3e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G27610 290 / 5e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 285 / 5e-89 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 293 / 1e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 286 / 5e-88 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G11290 284 / 3e-87 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004253 [exp] 780 / 0 AT3G49170 832 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031504 [exp] 309 / 3e-98 AT3G05340 754 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014594 [exp] 297 / 2e-92 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 297 / 2e-91 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 296 / 6e-90 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 290 / 6e-90 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 290 / 1e-89 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013319 [exp] 283 / 1e-88 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10013991 [exp] 290 / 3e-88 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G018700 [exp] 580 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G001000 [exp] 311 / 2e-99 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G164900 [exp] 313 / 5e-98 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 312 / 1e-96 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G021100 [exp] 302 / 3e-95 AT3G05340 860 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G208000 [exp] 300 / 2e-94 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G086200 [exp] 300 / 6e-94 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 298 / 2e-93 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G085500 [exp] 298 / 8e-93 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G129100 [exp] 303 / 3e-92 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10042161 pacid=23153696 polypeptide=Lus10042161 locus=Lus10042161.g ID=Lus10042161.BGIv1.0 annot-version=v1.0 ATGCTATTGATGTGTTCGTCGACATGGTTTCGTCCGGAATTGTGCCCGATAGGTTTTACTCACAGTGCAGTGATTTCAGCTTGTACGGAATTAGGATCGT TGTCTGCTGACGCAGTTTCATACTTGGATTATAAAGTCGGGGAATGCCCGGGACGTTTGCATGGATGCAGCTTGGTCGATAAGTACGCGAAATGCAATCT CGAAGGATCTCTGGCCGAATCTAGGAAGGTGTTTTCCAGGATGCAAGATCATAATGTTTTTGTGCAGAAAAATGGAGGATTACATGATATGGAAGCAATT GATCTCTTCGTAGAGATGATGCAGGAAGGAAATGTTAAGCCGAATGAGTTCACTTTAGCTGCCGTGATTAAGGCTTGCGCAGATCTGTCCAATTCACGAA TCGGAGAATCGTTACATGGCTATGCAGTGAAGGTTAGTCTTGAATCTGTCAACTGTGTTGGAAACTCGGTTATCAGCATGTATGCTAAATTTGGCCACAT GGAGAATTCGAGGAAAGCTTTCGACGTTTTGTTTGAGAAGAATTTGAATTCGGAGGATGCAGGAACCGAAATTGATGCTTTCACATTTGCAAGCTTGTTA AGTGGTGCTTCGAGCATCGTTGCAATCAGTAAAGGCGAGCAGATCCACGCCCGGATCCTGAAATCGAGATTCGAACCGAGCATTCACGTCTCGAATGCTT TGATCTCCATGTACTCCACTTGCGGAAACATAGAAGCTGCTTACCAAGTCTTCAAGGACATGGAGACAGAAGAACGAAATGTCATATCTTGGACTTCGAT GGTAACCGGATTTGCGAAACACGGATTCGCTACAAGAGCATTGGAGACATTTCACAACATGCTAGAGGCAGGAGTGAAGCCGAACGACGTGACCTATATA GCGGTTTTATCAGCTTGTAGCCACGCCGGTTTGGTCTCCCAAGGGTCGGAACATTTCGAATCGATGAGGAGGAAACACAGAATCGTGCCGAGAATGGAGC ATTACGCGTGTATGGTGGATTTGTTAGGTCGAGCAGGACGATTAACTGAAGCAATGGACGCTATTGAGGCAATGCCTTTCAAGCCGAACCCTTTGGTCCT CCGAACATTCCTTGGATCTTGCCAATTACATGGCGAGATAAAACTCGGCAAGCATGCTGCAGAGATGATGCTCGATCAAGATCCTGACGATCCGACGGCT TACGTGCTTTTATCCAACCTATACGCCTCAGCCAGGCAATGGGAAGAAATTACGGAGATAAGAAAACAGATGAAACAGAGGAATTTGGCGAAGGAAGCTG GATGCAGCTGGATTGAAACAGGTAACGTGGTGCACAAGTTTCACGTTGGAGACACTACACACGGAAGAGCTTTCAAAATTTTCGAGGAGCTGAAACGGTT GAGGGAAGAGATTAGAGAACTGGGGTATGTTCCGAAGACGGAATTTTGTGCTCCATGA
AA sequence Show only first row Show all	>Lus10042161 pacid=23153696 polypeptide=Lus10042161 locus=Lus10042161.g ID=Lus10042161.BGIv1.0 annot-version=v1.0 MLLMCSSTWFRPELCPIGFTHSAVISACTELGSLSADAVSYLDYKVGECPGRLHGCSLVDKYAKCNLEGSLAESRKVFSRMQDHNVFVQKNGGLHDMEAI DLFVEMMQEGNVKPNEFTLAAVIKACADLSNSRIGESLHGYAVKVSLESVNCVGNSVISMYAKFGHMENSRKAFDVLFEKNLNSEDAGTEIDAFTFASLL SGASSIVAISKGEQIHARILKSRFEPSIHVSNALISMYSTCGNIEAAYQVFKDMETEERNVISWTSMVTGFAKHGFATRALETFHNMLEAGVKPNDVTYI AVLSACSHAGLVSQGSEHFESMRRKHRIVPRMEHYACMVDLLGRAGRLTEAMDAIEAMPFKPNPLVLRTFLGSCQLHGEIKLGKHAAEMMLDQDPDDPTA YVLLSNLYASARQWEEITEIRKQMKQRNLAKEAGCSWIETGNVVHKFHVGDTTHGRAFKIFEELKRLREEIRELGYVPKTEFCAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Lus10042161 [exp]	0	1
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004518 [exp]	2.6	0.7580
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10027552 [exp]	4.1	0.8296
AT4G08210			Pentatricopeptide repeat (PPR-...		Lus10028082 [exp]	5.3	0.7786
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009049 [exp]	8.4	0.8207
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10003806 [exp]	12.2	0.7531
AT1G14060			GCK domain-containing protein ...		Lus10037148 [exp]	13.1	0.7365
AT1G43170		RPL3A, ARP1, EM...	embryo defective 2207, ribosom...		Lus10006181 [exp]	16.0	0.7768
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10026460 [exp]	18.8	0.7813
AT4G19010			AMP-dependent synthetase and l...		Lus10022542 [exp]	20.8	0.7442
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10014956 [exp]	22.5	0.7096

Compare expression of checked genes

Lus10042161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.