Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13050 297 / 3e-100 5-FCL 5-formyltetrahydrofolate cycloligase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004254 [exp] 572 / 0 AT5G13050 296 / 1e-100 5-formyltetrahydrofolate cycloligase (.1.2) Lus10010736 [exp] 278 / 2e-92 AT5G13050 276 / 8e-93 5-formyltetrahydrofolate cycloligase (.1.2) Lus10036681 [exp] 217 / 1e-69 AT5G13050 213 / 3e-69 5-formyltetrahydrofolate cycloligase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G072800 [exp] 339 / 2e-116 AT5G13050 309 / 6e-106 5-formyltetrahydrofolate cycloligase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [flax] [poplar] ISOCOT_Fold PF01812 [flax] [poplar] 5-FTHF_cyc-lig 5-formyltetrahydrofolate cyclo-ligase family
Representative CDS sequence Show only first row Show all	>Lus10042162 pacid=23153461 polypeptide=Lus10042162 locus=Lus10042162.g ID=Lus10042162.BGIv1.0 annot-version=v1.0 ATGCCGCTGCTGTTTACTCTCCGTCAATTGCAACTCCGTCCCTTCCTTTTCACCAACTTCTCCACCAAACGACCGCCGGCTACCACTGCCGCCAATTTCC CTGAAAAACAATCGCCGTTCGCCGCCATGAACACTGACCAATCCTCCAATCTGGACGAGCTCTTCAAGCAGAAGCGAGTTCTTCGGTCCAAAGTCCGCAA GTCACTCAAATCGATGGACCCTTCACTCAGATCACAAGAAGACGAAGCTATTCAGAGCATTGTGCTAGAAGCTCCATGGTTCAAGTTTAGTAAACGACTG TGTGCTTATATAAGCTGCAGTGCTTTAAGAGAAGTGGATACATATAAGCTCTTATCTCATATCCTCCGCCACCATTCCTCAGATGGAAATTCGGAGGTGG CGAAGAAGTTATACGTTCCCCGAGTAGAGGATAAGAATAGTAACATGAGAATGTTCCACATCTCAAGCATGGATGATTTGATTGCCAACTCGATGGATAT TTTGGAACCAGCTGCTGTTGATCGCCATGGCAACCAACGGGAAGATGTTATGCAAGCAGATGAGCCGGTTGACTTGTTCATTCTACCTGGGCTTGCATTT GACAAATCTGGAAGACGCTTAGGGCGCGGTGGAGGAGCTTTTGTGCCAATGCTTGGTGAAACACTTGGATGCTGCCTAATTTGCGAATCCTGTTATTTTG CATGTCCGATAAGATATTATGATACTTTGTTGAGCAAGTATCAGCTCCTCGCAAAGGAGAAGAATTGGAAGCAACCCTTACTAGTTGCACTCACATATTC TACCCAGATCGTGGAGGAAGGAGCTATATCAATGACTGAGAGCGATATACCGATTGACGCTCTTGTTACTCCATCTGGGGTGATACCTATCAGCTCGACA GCCTTAGAAAGGTCACTCTTTTTTCGGTTGACTAGTCTTTTTTACCACTTCAATCTTCATGGTCATACTTTATTAATGCTTTCTATTTTGCAGAATGGAG ATCTGACCAGTACAAGTCTGAGATACCACCACATGTTTCCGACATCCTAG
AA sequence Show only first row Show all	>Lus10042162 pacid=23153461 polypeptide=Lus10042162 locus=Lus10042162.g ID=Lus10042162.BGIv1.0 annot-version=v1.0 MPLLFTLRQLQLRPFLFTNFSTKRPPATTAANFPEKQSPFAAMNTDQSSNLDELFKQKRVLRSKVRKSLKSMDPSLRSQEDEAIQSIVLEAPWFKFSKRL CAYISCSALREVDTYKLLSHILRHHSSDGNSEVAKKLYVPRVEDKNSNMRMFHISSMDDLIANSMDILEPAAVDRHGNQREDVMQADEPVDLFILPGLAF DKSGRRLGRGGGAFVPMLGETLGCCLICESCYFACPIRYYDTLLSKYQLLAKEKNWKQPLLVALTYSTQIVEEGAISMTESDIPIDALVTPSGVIPISST ALERSLFFRLTSLFYHFNLHGHTLLMLSILQNGDLTSTSLRYHHMFPTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10042162 [exp]	0	1
AT5G66410		PLP3B	phosducin-like protein 3 homol...		Lus10016055 [exp]	2.4	0.9000
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10028780 [exp]	4.0	0.9130
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10004254 [exp]	4.2	0.8894
AT4G28720		YUC8	YUCCA 8, Flavin-binding monoox...		Lus10000494 [exp]	5.7	0.9120
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10019431 [exp]	8.6	0.8568
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10020232 [exp]	10.0	0.9026
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	10.7	0.9059
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10015711 [exp]	12.0	0.8841
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030617 [exp]	13.5	0.8652
AT4G23820			Pectin lyase-like superfamily ...		Lus10003890 [exp]	13.8	0.9004

Compare expression of checked genes

Lus10042162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.