Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47850 67 / 4e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004255 [exp] 461 / 3e-163 AT3G47850 216 / 2e-67 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G072600 [exp] 167 / 1e-48 AT3G47850 129 / 2e-34 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042163 pacid=23153868 polypeptide=Lus10042163 locus=Lus10042163.g ID=Lus10042163.BGIv1.0 annot-version=v1.0 ATGGTGGCCATCTCGCTCTACAGAGGGAATCTTCACCGAGTCCCCGACGCCCCTCGCCGATGGCTGATGCCGACTCGCAGCATTTCTCTCAGAGACTTCA AATCCCTCGTCTCACGTCGCTCCAGAGCCCTTTCTCGCCTCACCTCCTCCTCCTCCGTCATTGCCGTTGCCACGGCCACTACATCTAACCATAACCCTAA TCCTAGCCCTGACATTGCTACTATTACCTACCCTGGTGCCAAAGACGGCCGGGTTCCTCTTCCGGTTGAGCCGCCTCAGTTGGAGGATGAGAAAGCTGGT TATAACCGTCATCGTGACATTGAAGATGGCGGCGTTTCAGCTCAAGGTGGAGAGTCTGTTAAACAGGAAGTGAAGCCGGATGATGAAGTGATTCGGTTAG CTGTGGAGAATGCTGAAGCGGCTGAGAAAGGTGCAATTGAGGTGGTAAATGGCGATGGAGATTCGAAGGGTGGAAAGCCGGATGAACCTGTTCCGGAGGA GGCGAAAGACAATGCTGAGCTGTCAGATGAGAAAGCAAAAAGAGAAAAGGAGGTTGAGGAGAGGTTGGAAATTTTGAATGCGAAGAAACATAACCTAGTG CAGGTTCTTAAGCAGTTACTAAATGTTGAAGAAGAGTTGAAGAGAAGAAGCAGTATGCAAACAATGCCAAGTCGTCCTTCTGGTCCTCTTCAAGTAGAGA TCCCCAATGACTCTGGGTCAACCATCAGACACCTCACTCCTAGGGTGGGGTCAGAGGTGAATCCTGGTGCCGATAGGGAAGGAATCGAAACTGAGGACGT CTCAAATCAAAATATTCCTCCGCGCCATTTACAAAGAATGAGCAGTACATCTCCGTCATCAGAATCTCCCATTAGAAGACCTCCACCGCCATACAGCTTG GGTCCACACCCTCCTCGGCCGAGCCTGGGAGCAACCAGCAGCCCATCACGCTTTGCCCCAATGGGGCAACAAGGTCATCCTGCAAACCCGCCGGCCGTAT CCATATCTGGAACGAATTACGTGCCATCCTCTCCTTCCCCTGCAGCATCCGGCGGGACTTCTGCTTTCAGAGATGCTCGGCAACCAAGCCCTTGGAATTA G
AA sequence Show only first row Show all	>Lus10042163 pacid=23153868 polypeptide=Lus10042163 locus=Lus10042163.g ID=Lus10042163.BGIv1.0 annot-version=v1.0 MVAISLYRGNLHRVPDAPRRWLMPTRSISLRDFKSLVSRRSRALSRLTSSSSVIAVATATTSNHNPNPSPDIATITYPGAKDGRVPLPVEPPQLEDEKAG YNRHRDIEDGGVSAQGGESVKQEVKPDDEVIRLAVENAEAAEKGAIEVVNGDGDSKGGKPDEPVPEEAKDNAELSDEKAKREKEVEERLEILNAKKHNLV QVLKQLLNVEEELKRRSSMQTMPSRPSGPLQVEIPNDSGSTIRHLTPRVGSEVNPGADREGIETEDVSNQNIPPRHLQRMSSTSPSSESPIRRPPPPYSL GPHPPRPSLGATSSPSRFAPMGQQGHPANPPAVSISGTNYVPSSPSPAASGGTSAFRDARQPSPWN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47850			unknown protein		Lus10042163 [exp]	0	1
AT3G47850			unknown protein		Lus10004255 [exp]	1.0	0.8887
AT5G19680			Leucine-rich repeat (LRR) fami...		Lus10010892 [exp]	7.7	0.8490
AT3G09070			Protein of unknown function (D...		Lus10027785 [exp]	8.1	0.8513
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10005530 [exp]	10.9	0.8599
AT5G25510			Protein phosphatase 2A regulat...		Lus10013141 [exp]	11.0	0.8505
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10004962 [exp]	11.5	0.8463
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10010025 [exp]	13.4	0.8289
AT3G09070			Protein of unknown function (D...		Lus10035513 [exp]	15.0	0.8402
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10017885 [exp]	15.1	0.8336
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002915 [exp]	17.1	0.8297

Compare expression of checked genes

Lus10042163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.