Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62620 952 / 0 Galactosyltransferase family protein (.1.2) AT1G74800 909 / 0 Galactosyltransferase family protein (.1) AT1G27120 788 / 0 Galactosyltransferase family protein (.1) AT4G21060 676 / 0 Galactosyltransferase family protein (.1.2) AT1G26810 327 / 7e-103 GALT1 galactosyltransferase1 (.1) AT3G06440 307 / 2e-95 Galactosyltransferase family protein (.1.2) AT3G14960 66 / 3e-11 Galactosyltransferase family protein (.1) AT1G53290 65 / 4e-11 Galactosyltransferase family protein (.1) AT2G26100 65 / 5e-11 Galactosyltransferase family protein (.1) AT1G77810 52 / 6e-07 Galactosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004256 [exp] 1336 / 0 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10037238 [exp] 843 / 0 AT5G62620 881 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036686 [exp] 723 / 0 AT5G62620 743 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036154 [exp] 717 / 0 AT4G21060 963 / 0.0 Galactosyltransferase family protein (.1.2) Lus10030467 [exp] 338 / 2e-107 AT1G26810 780 / 0.0 galactosyltransferase1 (.1) Lus10012822 [exp] 338 / 4e-107 AT1G26810 828 / 0.0 galactosyltransferase1 (.1) Lus10036756 [exp] 324 / 9e-102 AT1G26810 831 / 0.0 galactosyltransferase1 (.1) Lus10037171 [exp] 318 / 2e-100 AT1G26810 764 / 0.0 galactosyltransferase1 (.1) Lus10032650 [exp] 316 / 2e-98 AT3G06440 659 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G067600 [exp] 1018 / 0 AT5G62620 920 / 0.0 Galactosyltransferase family protein (.1.2) Potri.012G072400 [exp] 1002 / 0 AT5G62620 905 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G040400 [exp] 847 / 0 AT5G62620 858 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G011300 [exp] 719 / 0 AT4G21060 1005 / 0.0 Galactosyltransferase family protein (.1.2) Potri.016G013300 [exp] 716 / 0 AT4G21060 1000 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G168500 [exp] 341 / 2e-108 AT1G26810 857 / 0.0 galactosyltransferase1 (.1) Potri.010G151600 [exp] 339 / 3e-107 AT3G06440 702 / 0.0 Galactosyltransferase family protein (.1.2) Potri.008G086900 [exp] 325 / 2e-102 AT1G26810 829 / 0.0 galactosyltransferase1 (.1) Potri.001G392700 [exp] 68 / 7e-12 AT1G53290 452 / 3e-160 Galactosyltransferase family protein (.1) Potri.006G228900 [exp] 68 / 8e-12 AT2G26100 452 / 1e-159 Galactosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase CL0004 [flax] [poplar] Concanavalin PF00337 [flax] [poplar] Gal-bind_lectin Galactoside-binding lectin
Representative CDS sequence Show only first row Show all	>Lus10042164 pacid=23153650 polypeptide=Lus10042164 locus=Lus10042164.g ID=Lus10042164.BGIv1.0 annot-version=v1.0 ATGAAGAGGGGAAAATCGGACACCAGATTGGACAGATTCGGCGCCGTCACCCGGCAGCGATCTCTCCACATCCTAATCGCCTTAGGTCTTCTCTATTTCC TCTTTATTACAGTGGAAATCCCTCTCCTCTTCAACTCCGCAACCCCTACTTCATCCTCCTCCTCATCGGTCTCTTCCGACTCCATTACTTACCCTTCCAA GCTTCAGAGCGAGCAGGATTTTCAGGAACAGGACGCGCCATCTCGCCCTGCTTCATGGGTGTCCGAATCCAGCCCGTCTCAGACCATTCCTCCCAAGAGG ATCGTGTCCGGGTTGAAGTTCGATCCGGAGACTTTCGACCCGACTAAGAAGGACAGATCCGTTGAGCTCCACAAGAGCGCCAAGACTGCTTGGGAGGTTG GAAGGAAGATGTGGGATGAGATTGAGAGGGACGAGTTCAAGTTCCTGCACCTTGATAAGAAGAAGCCGTCAGAGAAGAATCGGTCGTCCGAGTCGTCGTG CCCGAATTCGGTTTCGTTGACCGGGTCGGAGTTTTTGAAGCGGGGGAGACTTGTGGAGCTCCCCTGTGGGCTTACGCTCGGATCGCATATTACGGTGGTG GGGAAGCCGAGGGCTGCTCATGCTGAAGCTGAGCCGAAGATATCTATGATTAAGAAGGGCAGGCCTCGGGTTATGGTGTCACAGTTTATGATGGAGTTAC AGGGGTTGAAGATCGTGGATGGTGAGGATCCGCCGAGGGTTCTCCATTTTAATCCGAGGTTGAAAGGGGATTGGAGTAGTAGGCCTGTTATTGAGCAGAA TACTTGTTACAGGATGCAGTGGGGGACTGGTGTCCGTTGTGAAGGGTGGAAATCTAAGGCTGATGAAGAGACAGTTGATGGTCAGGTGAAGTGTGAGAAG TGGATCCGTGATGATGACAATCGCTCGGAGGAATCAAAGGCAAACTGGTGGCTAAGCCGGTTGATTGGCCGAACGAAAAAAGTGACATTTGACTGGCCAT TCCCATTTGTGGAGGAGAAGATGTTTGTTTTAACTTTAACGGCTGGTTTGGAGGGTTATCATGTTAACGTTGATGGGAGGCATGTGACGTCTTTCCCTTA TCGAACTGGATTTACACTTGAGGATGCGACGGGGCTAACTGTGTATGGAGATGTTGATGTCCATTCTGTATTTGCTGCATCGTTGCCAGCAAGTCACCCT AGCTTTGCTCCTCAGAGGCATCTGGAGAAGTCCATTGTGTGGAGAGCACCAGCACTTCCAGAAGGCCCTGTCGAACTCTTTATCGGCATTCTTTCAGCAG GTAATCATTTTGCCGAGAGGATGGCTGTCAGGAAGTCTTGGTTGCGGCATAGACTTATTCGAACTTCACATGTGGTGGCTCGGTTTTTCGTATCATTGCA TGCACGGATGGATGTGAATTTGGAACTGAAGAAAGAAGCAGAGTTTTTCAGAGATATTGTCATAGTGCCTTACATGGATAACTATGACCTTGTAGTGCTC AAAACTGTCGCCATCTGCGAATTTGGGGTCCATAGTGTCGGAGCAAAGTATATCATGAAGGGAGACGATGACACATTCATAAGGGTAGAGACAGTTCTTA ATGAAGCGAAGAAGGTTCCTGAGGGCAAAAGCTTGTATATAGGGAACATAAATTACTTCCACAAGCCCCTCCGACATGGTAAATGGGCTGTGACGTACCA GGAGTGGCCCGAGGAAGACTACCCGCCATATGCAAACGGGCCTGGCTACATATTGTCTGCAGACATAGCCAACTTCATCGCGTCGGAGTTTGAGAAACAT AAATTAAGACTGTTTAAAATGGAAGATGTTAGCATGGGAATGTGGGTTCAGAAGTTCAACAGAACGAAAACAGTCCAATACGTACACAGCTTGAAGTTCT GCCAGTTTGGATGCTTTGAAGGATATTACACCTCGCACTACCAGTCCCCGAGGCAGATGATCTGTCTCTGGGAAAAACTTCAAAAGTTTGGTTTACCTCA ATGCTGCAACATGAGATGA
AA sequence Show only first row Show all	>Lus10042164 pacid=23153650 polypeptide=Lus10042164 locus=Lus10042164.g ID=Lus10042164.BGIv1.0 annot-version=v1.0 MKRGKSDTRLDRFGAVTRQRSLHILIALGLLYFLFITVEIPLLFNSATPTSSSSSSVSSDSITYPSKLQSEQDFQEQDAPSRPASWVSESSPSQTIPPKR IVSGLKFDPETFDPTKKDRSVELHKSAKTAWEVGRKMWDEIERDEFKFLHLDKKKPSEKNRSSESSCPNSVSLTGSEFLKRGRLVELPCGLTLGSHITVV GKPRAAHAEAEPKISMIKKGRPRVMVSQFMMELQGLKIVDGEDPPRVLHFNPRLKGDWSSRPVIEQNTCYRMQWGTGVRCEGWKSKADEETVDGQVKCEK WIRDDDNRSEESKANWWLSRLIGRTKKVTFDWPFPFVEEKMFVLTLTAGLEGYHVNVDGRHVTSFPYRTGFTLEDATGLTVYGDVDVHSVFAASLPASHP SFAPQRHLEKSIVWRAPALPEGPVELFIGILSAGNHFAERMAVRKSWLRHRLIRTSHVVARFFVSLHARMDVNLELKKEAEFFRDIVIVPYMDNYDLVVL KTVAICEFGVHSVGAKYIMKGDDDTFIRVETVLNEAKKVPEGKSLYIGNINYFHKPLRHGKWAVTYQEWPEEDYPPYANGPGYILSADIANFIASEFEKH KLRLFKMEDVSMGMWVQKFNRTKTVQYVHSLKFCQFGCFEGYYTSHYQSPRQMICLWEKLQKFGLPQCCNMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62620			Galactosyltransferase family p...		Lus10042164 [exp]	0	1
AT5G62620			Galactosyltransferase family p...		Lus10004256 [exp]	2.4	0.9455
AT1G12470			zinc ion binding (.1)		Lus10033725 [exp]	3.9	0.9300
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10034548 [exp]	6.0	0.9448
AT1G06980			unknown protein		Lus10042244 [exp]	6.9	0.9429
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021045 [exp]	8.5	0.9378
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10011819 [exp]	9.2	0.9284
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10032726 [exp]	11.1	0.9410
AT3G55230			Disease resistance-responsive ...		Lus10030318 [exp]	13.9	0.9345
AT5G65030			unknown protein		Lus10041693 [exp]	14.0	0.9187
AT1G71710			DNAse I-like superfamily prote...		Lus10028727 [exp]	15.6	0.8901

Compare expression of checked genes

Lus10042164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.