Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18950 601 / 0 DDT domain superfamily (.1) AT5G25580 243 / 1e-72 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004259 [exp] 1145 / 0 AT1G18950 695 / 0.0 DDT domain superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G072200 [exp] 783 / 0 AT1G18950 691 / 0.0 DDT domain superfamily (.1) Potri.015G067300 [exp] 762 / 0 AT1G18950 665 / 0.0 DDT domain superfamily (.1) Potri.018G035700 [exp] 313 / 7e-98 AT5G25580 308 / 3e-100 unknown protein Potri.006G244800 [exp] 309 / 1e-96 AT5G25580 297 / 3e-96 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042167 pacid=23153595 polypeptide=Lus10042167 locus=Lus10042167.g ID=Lus10042167.BGIv1.0 annot-version=v1.0 ATGTCTCGCGACCAACCGATCTCTCCGTCGCGAGCCCCTAGTGACGCCGGCGAAGGAAACGGCGAGGTCGCCGTTAAACCCCAGCCTTCCGAGCTCACTA CTATCTACCGGAGTAATCGGCCTTCTCGCGCGTGTACCCTTCGCGCTGCTGCTAAGCTCAAGCAGGCTACTGCTAATAATGACCGGAATCACAAGCCCAA GAAGGACCACCGCCGCCAGAAGCAGCAGCAGCGGCGTGGGCGGCAAGAGGAGGAGGTTGACGAGGATGGCGGCGGGGACGAGTCGCCGCCGCATGATGAG AAATGTAGTGGTGGTAGTAGTAAGATTGTGACCTCGCTGGTGGCTCCTCCGGAGCCGGCTCAGTTGTCACGGTGGAATCTCCGTTCAATGTGGGAGCTAG CTTCAGTGCTCAATTTCCTGCATGTGTTTAGACCTTTCCTGAATATACCAGTTGAGTTCTCAGCTGAGGAGTTCGAAACTGCACTTCTCACGCCGAATTA TACATTGGGATCAATTCATATGCCTTTATTGAAGGCAATACCTCCCATTACTCGGACGGCTCTCACTCAGGATACTTGGATCACGGTTTTGTGCAGAAAA CTAAGAGACTGGTGGCATTGGGTTGCAGAAGGAGATCTTCCCATAGTTGCTTCGCATGGATTGGAGATTGAAGGATACAAATCACTAGATCCTGGGGTTC GGGTGGTGATCTTGAAAGCGCTGTGTGACATTCGTGTTGAGCAAGAAGACATAAGGAACTATATCGACAGCTCCATTAAGCAGGGCGCGCAACTGTCATT GTTCCGCAAAGAACGTATTGGTGGTGATTCACATGGGATAAGTTATTGGTATGAACCTGATGAAGTGGTTGGCTTCCGGTTATACCGTGAAATAAGAAAA ACAGATGTGCAGGCAAAAGGGAAGTCCAAAGGTTCTAAAGTCCTTCCTTCTACAGTATACCAGTGGGAAACTGTTGCTACGAATTATGATGAGTTTGTGG AAGTTTCTGAGAAGCTTTTCGCCAGTGAAAATAGAACAGAAGCTGCGCTTGGGAAGAAGTTAAAAAATGATAAGCTCCCTGAGATTGAGAAGGTTCATAA GAGGAAAGAGCGGTTGCTGAAGAAGCAACACAGGGAAGCTCTACTTCTAGATAACTATTTGAATGTGGATGGGCTAGCAACGGGACGCTCCCTACGTGAT AGAAAGCACGTCACGTACACTTTCGATGACTACGACCGATCAATAAATGAGGCCATTAAAGTCACCAAGAATAAACCACCATCCCCACAGCATGCTCCGA GAAGAGAAGGTATGGCCAGACGTGAAGCTACTTCGAATGGTGGAACGAGCGGCCCTTCATACACCACGAATGATGGTGCTTTCAGTGCTATGTCCCCCAT GTCATCCGATTATGAATTTAACGATAGTGATCATAAAGCTGAAGACTTGGATCGAGGCAACAGACGAAGACAAAGGCCGCAACGGTATTCCGAACGAGAC TATGTTGAAGCCATCTCAGACAATGAGGCCAATAGCGAAGATGATATCGTCGGAGAAGCCGTTTATGATGAAGAATACCTGAGGAAACGTAAACAGAGGA AGCTCTCCAGTGGCTCTGAAGGTGATGAAGAATACAAGTGGGATGGAGAAAATGGTGAAGAGGAGGAAGAGGAAGAAGAGGACGAGGATTCCTTGAGTAT CAGTGAGGAGGAGAGCGACCGGCCCCGGAAGTCCAGAAAGTTGCCGGGTCGCACTAGAAGAGAAACCAAGATGATCTCTGCTGACAAGTTCCGGTCTGGT TTAAGACGCAGTAGAAGGTCTACTAGAAACCGGATCGACTATAAGCAGTATGAGCTCTCAGACTCTGAAACAGATGCTGGAAAACAACGGGAGAAGTTGG ATGATGCTTCAGCAAACCACTCTGGTGCCAGCGAGAACGAAAATTCCTCGGGTGGAAGTCAAGACTATGACGACAATGGCAATGGCAATGATAGTGATGC CGAGGATGATAATGATGATAATAACGATGACGACAATTATGATGAACAAGATCCCAAAGGAGATCAGGCTGATGAAGAAGGCTATTCCAATGATGAGCAT GTTCCAAAAATAGATCATCCTGATCAAGGCTGCTCCAAAACGGAAGTGAAAGAAGAAACTAAGCCACCTGAGAAATCAAGTAGCCTGGGTCAAGATGATG TTGACAGTGTAAAGAAACCACGTTTCCTTGATCTAAACGAACTGGCTCCAGGTTCAGGATTTGAGGAAGGTCCAAGTACGCTAATGAAAGATGAAGACAG ATGA
AA sequence Show only first row Show all	>Lus10042167 pacid=23153595 polypeptide=Lus10042167 locus=Lus10042167.g ID=Lus10042167.BGIv1.0 annot-version=v1.0 MSRDQPISPSRAPSDAGEGNGEVAVKPQPSELTTIYRSNRPSRACTLRAAAKLKQATANNDRNHKPKKDHRRQKQQQRRGRQEEEVDEDGGGDESPPHDE KCSGGSSKIVTSLVAPPEPAQLSRWNLRSMWELASVLNFLHVFRPFLNIPVEFSAEEFETALLTPNYTLGSIHMPLLKAIPPITRTALTQDTWITVLCRK LRDWWHWVAEGDLPIVASHGLEIEGYKSLDPGVRVVILKALCDIRVEQEDIRNYIDSSIKQGAQLSLFRKERIGGDSHGISYWYEPDEVVGFRLYREIRK TDVQAKGKSKGSKVLPSTVYQWETVATNYDEFVEVSEKLFASENRTEAALGKKLKNDKLPEIEKVHKRKERLLKKQHREALLLDNYLNVDGLATGRSLRD RKHVTYTFDDYDRSINEAIKVTKNKPPSPQHAPRREGMARREATSNGGTSGPSYTTNDGAFSAMSPMSSDYEFNDSDHKAEDLDRGNRRRQRPQRYSERD YVEAISDNEANSEDDIVGEAVYDEEYLRKRKQRKLSSGSEGDEEYKWDGENGEEEEEEEEDEDSLSISEEESDRPRKSRKLPGRTRRETKMISADKFRSG LRRSRRSTRNRIDYKQYELSDSETDAGKQREKLDDASANHSGASENENSSGGSQDYDDNGNGNDSDAEDDNDDNNDDDNYDEQDPKGDQADEEGYSNDEH VPKIDHPDQGCSKTEVKEETKPPEKSSSLGQDDVDSVKKPRFLDLNELAPGSGFEEGPSTLMKDEDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18950			DDT domain superfamily (.1)		Lus10042167 [exp]	0	1
AT1G18950			DDT domain superfamily (.1)		Lus10004259 [exp]	1.0	0.9430
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10003385 [exp]	4.5	0.8947
AT5G18230			transcription regulator NOT2/N...		Lus10020262 [exp]	4.9	0.9026
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10002748 [exp]	7.7	0.9120
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Lus10026137 [exp]	9.7	0.8708
AT3G44530		HIRA	homolog of histone chaperone H...		Lus10020585 [exp]	12.0	0.8895
AT2G29210			splicing factor PWI domain-con...		Lus10001561 [exp]	13.0	0.8852
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016332 [exp]	15.9	0.8985
AT5G46920			Intron maturase, type II famil...		Lus10003020 [exp]	16.4	0.8859
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Lus10037946 [exp]	16.6	0.8818

Compare expression of checked genes

Lus10042167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.