Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13700 316 / 3e-103 ATPAO1, APAO polyamine oxidase 1 (.1) AT3G59050 136 / 5e-35 ATPAO3 polyamine oxidase 3 (.1) AT2G43020 124 / 7e-31 ATPAO2 polyamine oxidase 2 (.1) AT1G65840 114 / 4e-27 ATPAO4 polyamine oxidase 4 (.1) AT1G62830 105 / 8e-24 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT3G10390 100 / 2e-22 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT4G16310 97 / 6e-21 LDL3 LSD1-like 3 (.1) AT3G13682 94 / 3e-20 LDL2 LSD1-like2 (.1) AT4G29720 81 / 4e-16 ATPAO5 polyamine oxidase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019725 [exp] 509 / 2e-178 AT5G13700 365 / 2e-122 polyamine oxidase 1 (.1) Lus10041898 [exp] 464 / 3e-158 AT5G13700 349 / 2e-113 polyamine oxidase 1 (.1) Lus10042127 [exp] 413 / 3e-141 AT5G13700 320 / 5e-105 polyamine oxidase 1 (.1) Lus10004260 [exp] 362 / 1e-122 AT5G13700 99 / 5e-23 polyamine oxidase 1 (.1) Lus10039599 [exp] 328 / 2e-107 AT5G13700 693 / 0.0 polyamine oxidase 1 (.1) Lus10029495 [exp] 258 / 2e-80 AT5G13700 587 / 0.0 polyamine oxidase 1 (.1) Lus10015996 [exp] 118 / 7e-28 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10012283 [exp] 114 / 1e-26 AT1G62830 984 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10017464 [exp] 104 / 2e-23 AT3G10390 1198 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G074600 [exp] 542 / 0 AT5G13700 395 / 5e-134 polyamine oxidase 1 (.1) Potri.012G079500 [exp] 501 / 3e-175 AT5G13700 400 / 7e-136 polyamine oxidase 1 (.1) Potri.001G263400 [exp] 326 / 1e-106 AT5G13700 734 / 0.0 polyamine oxidase 1 (.1) Potri.009G058200 [exp] 324 / 5e-106 AT5G13700 756 / 0.0 polyamine oxidase 1 (.1) Potri.017G144001 [exp] 139 / 7e-36 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.004G075800 [exp] 134 / 3e-34 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.002G055300 [exp] 112 / 2e-26 AT2G43020 809 / 0.0 polyamine oxidase 2 (.1) Potri.005G207300 [exp] 111 / 3e-26 AT2G43020 820 / 0.0 polyamine oxidase 2 (.1) Potri.010G227200 [exp] 112 / 4e-26 AT3G10390 1135 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.002G013100 [exp] 108 / 8e-25 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10042168 pacid=23153926 polypeptide=Lus10042168 locus=Lus10042168.g ID=Lus10042168.BGIv1.0 annot-version=v1.0 ATGAAGAAGTCCATTCTCTCGCTTATCTCCCTTCTTCTTATTCTCCTTCATGATGCACTTTCAGCATCCGCCTCCGTCTCACCGCCATCACACGCCGTCA TCGTGGTTGGAGCCGGAATGTCAGGAATTATGGCGGCGAAAACACTCAAGGAAGGCGGAATAGAGGACGTGGTGATCCTGGAAGCGACGTCGAGGATCGG CGGCCGGATGAAGAAGTCGGAGATCGGCGGGTACACGGTGGAGCTAGGAGCCAACTGGATTCAGAGCGGCGGGCCTGTTTCGAATCCGATAGCCGGCATA GCGAAGAAATTGAACCTCAAATCTTCCCTCACTGATCTGTCCAACCTCTCCTCCAACACTTACCAACAAGAAGGCGGGTTGTACGGAAAGGAAATGGTGG AAGAAGCAGAGCGTTTCGCCGTTGCCAGAGATGATTTCTGCGTAAACTTGAGCAGATTCCTGAGTTCCCAACCAGGGAAAGACGACGACGTTTCGATTTC TGCCGGATACCACTTGTTTGGAAAGATTCCGGAGACTGCGTTGGATAGGCTGGTGGATTACGTCCACAACGACTATGACACCGCGGAGCCGCCGGAAATG ACGAGTTTGAAGAACAGTTTTCCTAGGTGGGAGAACGCTGATCACGGCGAGCAATCGTATTTCGTGGCGGATTCAAGAGGGTTCGAGGGTGTAGTTCAAT ACTTAACCGACCAGTTCCTTTCATCTGATCTCACCAACGATTCTCGTCTACACTTCAACAAGGTGGTCAGGAAAATAACCTACGACGACACAAGTGTACA AGTAACAACTGAAGATGGGTCGATATACAGAGCAAAATATGTCATCGTTTCAGCAAGTTTGGGAGTGCTCCAGAGCAACCTTATTCAGTTCAGCCCACTT CTCCCCACGTGGAAGAGAATTGCGATAGACGATTTCAGCATGACACTCTACACAAAGATATTCCTCAAATTTCCTTGCACGTTCTGGCCAACTACAACAC AGCTCTTCCTCTACGCTCACATCGAACGAGGCTACTACCCGATTTGGCAGAATCTAGACGGTGAATATCCCGGATCGAACATTTTATTCGTATTGGTGTC ACACGACGAGTCGAGAAGAATAGATCAGTTAAAGGACAAAGATGTTGCAGCTGAGATGATGAATGTACTTCGAAAGATGTTCGGGAAGGACATTCCGGAA CCAGAGAGCATATTGGTGCCGAGGTGGTCGTCCGATAGGTTCTACAAGGGATGCTATTCGAATTGGCCTCGTGGGTATACTAGAGGCCGCCATAGGCAAC TTGGGGCTAATGTTGGCCGAGTTTACTTCACTGGTGAGCACACCCACAACAAGTATTATGGATGGGTCACCGGGGCTTACTTCGCAGGGATCGCAACTGC CGAAGATTTGATGAAAAACACGATCACAAGTGCTTGA
AA sequence Show only first row Show all	>Lus10042168 pacid=23153926 polypeptide=Lus10042168 locus=Lus10042168.g ID=Lus10042168.BGIv1.0 annot-version=v1.0 MKKSILSLISLLLILLHDALSASASVSPPSHAVIVVGAGMSGIMAAKTLKEGGIEDVVILEATSRIGGRMKKSEIGGYTVELGANWIQSGGPVSNPIAGI AKKLNLKSSLTDLSNLSSNTYQQEGGLYGKEMVEEAERFAVARDDFCVNLSRFLSSQPGKDDDVSISAGYHLFGKIPETALDRLVDYVHNDYDTAEPPEM TSLKNSFPRWENADHGEQSYFVADSRGFEGVVQYLTDQFLSSDLTNDSRLHFNKVVRKITYDDTSVQVTTEDGSIYRAKYVIVSASLGVLQSNLIQFSPL LPTWKRIAIDDFSMTLYTKIFLKFPCTFWPTTTQLFLYAHIERGYYPIWQNLDGEYPGSNILFVLVSHDESRRIDQLKDKDVAAEMMNVLRKMFGKDIPE PESILVPRWSSDRFYKGCYSNWPRGYTRGRHRQLGANVGRVYFTGEHTHNKYYGWVTGAYFAGIATAEDLMKNTITSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10042168 [exp]	0	1
AT1G77810			Galactosyltransferase family p...		Lus10006933 [exp]	4.5	0.8632
AT3G45070			P-loop containing nucleoside t...		Lus10003070 [exp]	7.4	0.8977
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Lus10014428 [exp]	11.6	0.8602
AT1G27200			Domain of unknown function (DU...		Lus10013291 [exp]	11.7	0.8699
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10027846 [exp]	12.5	0.8749
AT5G64240		AtMCP1a, ATMC3	metacaspase 1a, metacaspase 3 ...		Lus10035630 [exp]	13.8	0.8766
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10040879 [exp]	16.4	0.7975
AT1G13970			Protein of unknown function (D...		Lus10000174 [exp]	17.1	0.8552
AT3G25855			Copper transport protein famil...		Lus10021687 [exp]	17.3	0.8670
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10023843 [exp]	20.7	0.7945

Compare expression of checked genes

Lus10042168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.