Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62640 169 / 3e-46 AtELF5, ELF5 EARLY FLOWERING 5, proline-rich family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004261 [exp] 375 / 1e-124 AT5G62640 242 / 2e-73 EARLY FLOWERING 5, proline-rich family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G090200 [exp] 226 / 2e-67 AT5G62640 159 / 2e-42 EARLY FLOWERING 5, proline-rich family protein (.1.2.3) Potri.012G093000 [exp] 226 / 2e-67 AT5G62640 171 / 1e-46 EARLY FLOWERING 5, proline-rich family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09429 [flax] [poplar] Wbp11 WW domain binding protein 11
Representative CDS sequence Show only first row Show all	>Lus10042169 pacid=23153622 polypeptide=Lus10042169 locus=Lus10042169.g ID=Lus10042169.BGIv1.0 annot-version=v1.0 ATGGTGAAGACGACGAAAGGAGGCAAAGTTATGAACCCTACGGACGCCTTCCGTAAGGAGCTCCGTAAGAAGGAATTGAAACGGAATAAGAAGGAAAGGA AGAAGGTGAGGGAGGTTGGAATTTTGAAGAAAGATCCTGATGTGATAAAGGACCAGATACAGAAGCTGGAACAGATGAAGGCTGATGGGGCACTGGACAA AGCAAGAAAGCACAAGAAGAGACAGCTCGAGGATACACTTAATCTTGTAATAAAGAAGAGGAAGGAATATAATGAAAAACTGAAAGAGAAGGGTGAGACC CCTGTCATGTTCAGTCATCTAGGACCCCCTAGAAGGACATCTGCGGAAGAAGAAGAGCGAGCCAAGCACCCAAAGCCTGAGGACTCTGTGTATTACCATC CTACATTAAATCCTACTGGCGCTCCACCGCCCGGAAAACCTCCAATGTACAAATCGTCTATAGGTCCTCGTGTTCCTTTGTCTGCTGGGGCATCATCATC GAACGCAGAGTCAGAGGATGGTACTTTAGCAGTACCACTCCCTCCACCCCCTCCTTTGCCAGAGTCTGGCAATGTGGATGCTGGTGATGGTTCTGTACCT ACTTCTTTGCCTCTACCACCTCCTCCATTGCCTCCGCAACCTCCTGCATCAAGCTTGGGTATGTCACTGCCTCCTCTACCTTTGGCACCGCCACCTCCTG GCCCCCCACCTAAAGACCAAGTTACAAGTTTTGCATCGTTTCAGCCACCTCCGCCTGGCACTAATGACGGTGAAAATGAGAAAGATTCAGCTACATTCGC AGATGACTCATCCAAGAATGATCAGGTACCTGTTTTGCCACCTCCACCTCCTCCACCTGGAATGCCTATGAACTCATCCAGCAATCAGTTTGAAAACACT TCATCTGGAGCTGAGGGTAATCATCCTTCAGCAATTGAAGGTGCAAGAATGGTTCCACCGCCGCCACCTCCTCCTAGGCAACAACCTCAACTGCCTGGAC CGCCCCTGATCCTGGGCATGCAGCAGCCTGATTTACTACCCCTAGGAATGGGGCGATTCCCTCCCCCTCCTCCTCCACCCCCACCCGGTATGAGGCCGCC TTTATCGGCTCCCGGGCTTCCTGGCCAAGTGGCTCTTCCAGGAATGATGGCTCCAATGATTCCAAGACCACCGTACGGTCCACCACCTGGACCTCCGCCG ATGATGCGACCGCCACTACCTCCTGGTCCTCCTCCTGGTATGGTAGAAGATGGCATGGGTAGGTTTGTGGCTCCCCCGAAACCATCTTTTGTGAAATCTG CTGCGTCTACTGTCGTTAAGAGGCCGCTCGCACAGCACACCCCGGAACTTACAGCCATGGTTCCTGCATCTGTGAGAGTGAGGAGAGAAACTGCTGCCTT GAAACCCAAACCGAAGGCAATGATGCCTTCGGTATCCATAAGGCCTGTAGCTCATACTGTCTTGAAGCCGGCACCACATACTTCATCGGCACCTGCCGTA GCAGCGAAAAGTCAAACGAAAAAACAGAGTGTCGACGACTCGTACTCAGCCTTCTTGGAAGACATGAAGGCACTTGGTGCGCTTGATAGTTGA
AA sequence Show only first row Show all	>Lus10042169 pacid=23153622 polypeptide=Lus10042169 locus=Lus10042169.g ID=Lus10042169.BGIv1.0 annot-version=v1.0 MVKTTKGGKVMNPTDAFRKELRKKELKRNKKERKKVREVGILKKDPDVIKDQIQKLEQMKADGALDKARKHKKRQLEDTLNLVIKKRKEYNEKLKEKGET PVMFSHLGPPRRTSAEEEERAKHPKPEDSVYYHPTLNPTGAPPPGKPPMYKSSIGPRVPLSAGASSSNAESEDGTLAVPLPPPPPLPESGNVDAGDGSVP TSLPLPPPPLPPQPPASSLGMSLPPLPLAPPPPGPPPKDQVTSFASFQPPPPGTNDGENEKDSATFADDSSKNDQVPVLPPPPPPPGMPMNSSSNQFENT SSGAEGNHPSAIEGARMVPPPPPPPRQQPQLPGPPLILGMQQPDLLPLGMGRFPPPPPPPPPGMRPPLSAPGLPGQVALPGMMAPMIPRPPYGPPPGPPP MMRPPLPPGPPPGMVEDGMGRFVAPPKPSFVKSAASTVVKRPLAQHTPELTAMVPASVRVRRETAALKPKPKAMMPSVSIRPVAHTVLKPAPHTSSAPAV AAKSQTKKQSVDDSYSAFLEDMKALGALDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Lus10042169 [exp]	0	1
AT2G32600			hydroxyproline-rich glycoprote...		Lus10022607 [exp]	1.4	0.8873
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Lus10004261 [exp]	1.7	0.8816
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10009275 [exp]	2.0	0.8570
AT2G32600			hydroxyproline-rich glycoprote...		Lus10021506 [exp]	2.4	0.8837
AT1G16520			unknown protein		Lus10031771 [exp]	8.8	0.7770
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10022834 [exp]	9.2	0.7628
AT1G61150			LisH and RanBPM domains contai...		Lus10018464 [exp]	11.8	0.8024
AT3G22440			FRIGIDA-like protein (.1)		Lus10006113 [exp]	12.2	0.7709
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10036874 [exp]	13.9	0.7982
AT1G15190			Fasciclin-like arabinogalactan...		Lus10015081 [exp]	14.1	0.8079

Compare expression of checked genes

Lus10042169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.