Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74780 546 / 0 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G34355 521 / 0 Major facilitator superfamily protein (.1) AT1G18940 517 / 2e-180 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G34350 511 / 8e-178 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G39210 341 / 3e-110 Major facilitator superfamily protein (.1) AT4G34950 282 / 3e-88 Major facilitator superfamily protein (.1) AT5G14120 270 / 3e-83 Major facilitator superfamily protein (.1) AT3G01930 265 / 2e-81 Major facilitator superfamily protein (.1.2) AT5G50630 239 / 5e-72 Major facilitator superfamily protein (.1) AT5G50520 239 / 5e-72 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033115 [exp] 502 / 6e-174 AT1G74780 619 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Lus10036663 [exp] 412 / 1e-138 AT1G74780 520 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Lus10014640 [exp] 338 / 1e-109 AT2G39210 728 / 0.0 Major facilitator superfamily protein (.1) Lus10037949 [exp] 330 / 6e-106 AT2G39210 807 / 0.0 Major facilitator superfamily protein (.1) Lus10037948 [exp] 329 / 7e-106 AT2G39210 839 / 0.0 Major facilitator superfamily protein (.1) Lus10033790 [exp] 326 / 9e-105 AT2G39210 734 / 0.0 Major facilitator superfamily protein (.1) Lus10038682 [exp] 320 / 2e-102 AT2G39210 829 / 0.0 Major facilitator superfamily protein (.1) Lus10025053 [exp] 283 / 1e-88 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1) Lus10034491 [exp] 282 / 4e-88 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G067000 [exp] 528 / 0 AT1G74780 562 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Potri.002G133900 [exp] 343 / 5e-112 AT2G39210 666 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 296 / 7e-94 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1) Potri.009G006400 [exp] 287 / 3e-90 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 265 / 8e-82 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.006G122400 [exp] 200 / 7e-57 AT2G39210 767 / 0.0 Major facilitator superfamily protein (.1) Potri.012G072101 [exp] 179 / 1e-53 AT1G74780 0 / 1 Nodulin-like / Major Facilitator Superfamily protein (.1) Potri.008G032901 [exp] 185 / 2e-51 AT2G39210 830 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 181 / 2e-50 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 180 / 7e-50 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10042170 pacid=23154001 polypeptide=Lus10042170 locus=Lus10042170.g ID=Lus10042170.BGIv1.0 annot-version=v1.0 ATGGCTCGGCTTAGACTCCCACAAGGACTCAACTCCAAGTGGTTCTCCACCGTCGCCAGTATATGGATCCAATCCACAAGCGGCTCCCTCTACACCTTCT CAGTGTACTCCGCCGCCCTCAAGTCCACCCAGGGTTACGACCAGTCCACCTTAGACACCGTCACCGTCTTCAAGGACATCGGTGCCAACTGCGGGGTCCT TGCCGGTGTTCTCTACTCTTCAGTCACTTCCGATGATCGTAGTAGCCCGTGGATGGTTCATTTGGCCGGCGCGATTCAGAACTTCGCTGGATACTTCCTC ATATGGGCCGCCGTCGTCGGATTGATCCCTCCTCCCCCGGTTCCCGTGATGTGTCTCTTCATGATCTTGGCTGCTCACGCTCAGAGCTTTTTCAACACCG CGAACGTCGTCACCTCCGTCCAGAACTTCCGTACCTACAGCGGAACTGCTGTCGGTATCATGAAGGGTTTCGTGGGTCTCAGTGGTGCGATGTTGATACA GTTCTACCAGACGGTATTTGATAACAAACCAGAGACGTTTCTGTTGATGCTGGCAGTTCTGCCTACTCTCAACACGTTAATTTTAATGTGGTTTGTGAGA ATCCACAGTAGAAATGAAGAACACGAGAAGAAGCATCTTGATGAGTTCTCATTGACTGCCATGACTATCGCTGCATATCTTCTGCTCATCATCATAGTTG AAAATGTCTTCAGTTTCCAGTTTGTGTTGCGTGCCATTGCCTTTGCCCTGCTCTTGGCTCTCCTTGCTTCGCCTCTTCTCGTTGCTGTTAGAGCAACAAC AGCAACGATCACAGGCGAAGATTGTTTTGTTGACGAGTCTAGGTTACTCCCTAGACAAGAGGACGAACGTATTTCTCTGCCAGAGCTGAATCTTTTGCAG GCAATCAGCAAAGCGGATTTCTGGATCCTGTTTCTCGCCACAGCTTGCGGCATGGGAACAGGACTCGCCACGGTGAACAATATGGGCCAGCTTGGACAGT CTCTAGGCTATGGGAGCCGCGAGACGAGCACCTTGGTCTCTTTATGGAGCATATGGAACTTTCTTGGAAGATTTGGAGGCGGCTACGTGTCTGATTATTT CCTGCACAACTACGGATGCGCAAGGCCATTGTTCATCGCCATCACTCTTCTAGGCATGAGTGTCGGTCATGTTGTGATTGCTTCTGGCTTTCGCGATGCG CTGTATGCTGGTTCGATACTGATAGGTGTCTGCTATGGTTCTCAGTGGTCGTTAATGCCTTCTATTGCATCTGAGATATTCGGGGTGCGCCATATGGGGA CGATCTTTAACACCATTACCATTGCATCTCCTGTTGGGACTTATATTTTTTCGGTAAGGGTGATAGGATTTATATATGACAAGGAATCATCGGAGACAGA GAACTTCTGCTATGGAACTCATTGCTTCATGGTTTCTTTTGTGATAATGGCATCTGCCACTTTGCTAGGGTCTCTTGCTGCCTTTTGGTTGTTCTTGCGA ACAAGATTGTTTTACAGTCAGGTTATACTCAGGAGATTACAGACTGCCTTGACAGAGAACAACGTCGATGGATTCTCAGAGCATGATCAGACATTTTAA
AA sequence Show only first row Show all	>Lus10042170 pacid=23154001 polypeptide=Lus10042170 locus=Lus10042170.g ID=Lus10042170.BGIv1.0 annot-version=v1.0 MARLRLPQGLNSKWFSTVASIWIQSTSGSLYTFSVYSAALKSTQGYDQSTLDTVTVFKDIGANCGVLAGVLYSSVTSDDRSSPWMVHLAGAIQNFAGYFL IWAAVVGLIPPPPVPVMCLFMILAAHAQSFFNTANVVTSVQNFRTYSGTAVGIMKGFVGLSGAMLIQFYQTVFDNKPETFLLMLAVLPTLNTLILMWFVR IHSRNEEHEKKHLDEFSLTAMTIAAYLLLIIIVENVFSFQFVLRAIAFALLLALLASPLLVAVRATTATITGEDCFVDESRLLPRQEDERISLPELNLLQ AISKADFWILFLATACGMGTGLATVNNMGQLGQSLGYGSRETSTLVSLWSIWNFLGRFGGGYVSDYFLHNYGCARPLFIAITLLGMSVGHVVIASGFRDA LYAGSILIGVCYGSQWSLMPSIASEIFGVRHMGTIFNTITIASPVGTYIFSVRVIGFIYDKESSETENFCYGTHCFMVSFVIMASATLLGSLAAFWLFLR TRLFYSQVILRRLQTALTENNVDGFSEHDQTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74780			Nodulin-like / Major Facilitat...		Lus10042170 [exp]	0	1
AT4G29800		PLP8, PLAIVD ,P...	PATATIN-like protein 8 (.1.2)		Lus10023512 [exp]	8.8	0.8664
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10040394 [exp]	17.3	0.8617
AT3G13062			Polyketide cyclase/dehydrase a...		Lus10034791 [exp]	27.5	0.8122
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10000587 [exp]	37.0	0.8018
AT1G52080		AR791	actin binding protein family (...		Lus10038254 [exp]	54.0	0.7709
AT5G47560		ATTDT, ATSDAT	tonoplast dicarboxylate transp...		Lus10039023 [exp]	54.9	0.7983
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10029242 [exp]	55.7	0.8008
AT5G40440		ATMKK3	mitogen-activated protein kina...		Lus10022265 [exp]	59.1	0.7715
AT1G73980			Phosphoribulokinase / Uridine ...		Lus10009040 [exp]	60.5	0.7598
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10006676 [exp]	72.9	0.7522

Compare expression of checked genes

Lus10042170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.