Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14200 59 / 1e-10 RING/U-box superfamily protein (.1) AT1G68180 58 / 3e-10 RING/U-box superfamily protein (.1) AT3G60080 56 / 3e-09 RING/U-box superfamily protein (.1) AT3G47990 56 / 4e-09 SIS3 SUGAR-INSENSITIVE 3 (.1) AT2G40830 55 / 4e-09 RHC1A RING-H2 finger C1A (.1.2.3) AT4G31450 55 / 5e-09 RING/U-box superfamily protein (.1) AT3G19950 54 / 1e-08 RING/U-box superfamily protein (.1) AT3G13430 54 / 1e-08 RING/U-box superfamily protein (.1.2.3) AT1G60360 54 / 1e-08 RING/U-box superfamily protein (.1) AT4G26400 54 / 1e-08 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034644 [exp] 59 / 1e-10 AT1G17970 139 / 3e-39 RING/U-box superfamily protein (.1) Lus10001582 [exp] 56 / 8e-10 AT2G40830 178 / 2e-55 RING-H2 finger C1A (.1.2.3) Lus10002637 [exp] 57 / 1e-09 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10020258 [exp] 57 / 1e-09 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10022967 [exp] 56 / 3e-09 AT1G60360 153 / 3e-45 RING/U-box superfamily protein (.1) Lus10021722 [exp] 56 / 3e-09 AT1G17970 159 / 1e-45 RING/U-box superfamily protein (.1) Lus10003698 [exp] 55 / 5e-09 AT2G40830 263 / 5e-87 RING-H2 finger C1A (.1.2.3) Lus10001611 [exp] 54 / 9e-09 AT1G68180 156 / 2e-46 RING/U-box superfamily protein (.1) Lus10013397 [exp] 54 / 1e-08 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G118000 [exp] 65 / 1e-12 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.007G107000 [exp] 64 / 2e-12 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.005G062400 [exp] 60 / 6e-11 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.019G032500 [exp] 60 / 1e-10 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.001G185200 [exp] 58 / 2e-10 AT3G02340 66 / 2e-12 RING/U-box superfamily protein (.1) Potri.001G103900 [exp] 57 / 3e-10 AT4G26400 85 / 2e-19 RING/U-box superfamily protein (.1.2) Potri.004G122000 [exp] 56 / 6e-10 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.017G038300 [exp] 56 / 7e-10 AT4G26400 68 / 2e-13 RING/U-box superfamily protein (.1.2) Potri.017G102800 [exp] 56 / 9e-10 AT3G13430 69 / 9e-14 RING/U-box superfamily protein (.1.2.3) Potri.013G060500 [exp] 56 / 3e-09 AT1G55530 207 / 2e-64 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10042171 pacid=23154028 polypeptide=Lus10042171 locus=Lus10042171.g ID=Lus10042171.BGIv1.0 annot-version=v1.0 ATGGCATACGTCGTCGACTCCAGCCAGTACGGCTACAACTGCAACGCATGGCTCGACGACAACCAGCAGCAGCCGGCGTTGACTTCCAACTTGGCCGGAA TACCCTTGCTCTTTATCCAGCTATTCACCCAGATCGCACCACAAACACCGACCCTGACATACAGCTTGCTAGTGCCCAGGGACCAGCTCAACAGCCCCTT GGCGACGGTGATGCTATCCCGCAGGCTGACAGAGATTCAGATTCCGATGGACACTCATCCGATCGTTATCACCAGGATCAACGAGTGCGCCCTCCAGATC CTGGACGGGGATGGCAGAGAGGTGATTGGGATGTGCGTCGTGCTCACCGACGTCATATTGGGGGAGGAGCAGGAGGAGGAAAGTAGTGAAGCGATGATTA AAAAAGTTAGGGTTTACGGCGGCGAAGGAGGAGGAGAAGAGACGGCGGGGAGCTGCGTGATATGTATGGAGGAGTTTGGGATTGGGAGTGAAGCGGCGAG AATGGGATGTTTGCATTCCTACCACGTGGATTGCATAAGGAATTGGCTCTGCAAGTCCCCTACTTGCCCGCTCTGTCGCTTTTCTCCCTACTGTAATTAG
AA sequence Show only first row Show all	>Lus10042171 pacid=23154028 polypeptide=Lus10042171 locus=Lus10042171.g ID=Lus10042171.BGIv1.0 annot-version=v1.0 MAYVVDSSQYGYNCNAWLDDNQQQPALTSNLAGIPLLFIQLFTQIAPQTPTLTYSLLVPRDQLNSPLATVMLSRRLTEIQIPMDTHPIVITRINECALQI LDGDGREVIGMCVVLTDVILGEEQEEESSEAMIKKVRVYGGEGGGEETAGSCVICMEEFGIGSEAARMGCLHSYHVDCIRNWLCKSPTCPLCRFSPYCN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14200			RING/U-box superfamily protein...		Lus10042171 [exp]	0	1
AT2G25270			unknown protein		Lus10026050 [exp]	4.9	0.7363
					Lus10028048 [exp]	10.4	0.6259
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10001022 [exp]	12.7	0.6259
AT5G67440		MEL2, NPY3	NAKED PINS IN YUC MUTANTS 3, M...		Lus10025193 [exp]	14.7	0.6259
					Lus10035026 [exp]	16.4	0.6259
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10008888 [exp]	18.0	0.6259
AT5G13920			GRF zinc finger / Zinc knuckle...		Lus10020975 [exp]	19.2	0.5861
					Lus10009177 [exp]	19.4	0.6259
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10011252 [exp]	20.8	0.6259
					Lus10026785 [exp]	22.0	0.6259

Compare expression of checked genes

Lus10042171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.