Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47730 355 / 4e-111 ABCA2, ATATH1 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) AT5G61730 334 / 1e-103 ABCA9, ATATH11 ARABIDOPSIS THALIANA ABC2 HOMOLOG 11, ATP-binding cassette A9, ABC2 homolog 11 (.1) AT5G61690 311 / 3e-95 ABCA11, ATATH15 ARABIDOPSIS THALIANA ABC2 HOMOLOG 15, ATP-binding cassette A11, ABC2 homolog 15 (.1) AT2G41700 99 / 3e-21 AtABCA1, ABCA1 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) AT3G47760 95 / 3e-20 ATATH4, ABCA5 A. THALIANA ABC2 HOMOLOG 4, ATP-binding cassette A5, ABC2 homolog 4 (.1) AT3G47750 95 / 5e-20 ATATH3, ABCA4 ATP-binding cassette A4, ATP binding cassette subfamily A4 (.1) AT5G61740 95 / 5e-20 ABCA10, ATATH14 ARABIDOPSIS THALIANA ABC2 HOMOLOG 14, ATP-binding cassette A10, ABC2 homolog 14 (.1) AT3G47780 94 / 8e-20 ABCA7, ATATH6 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) AT3G47770 93 / 2e-19 ATATH5, ABCA6 A. THALIANA ABC2 HOMOLOG 5, ATP-binding cassette A6, ABC2 homolog 5 (.1) AT5G61700 91 / 6e-19 ABCA12, ATATH16 ARABIDOPSIS THALIANA ABC2 HOMOLOG 16, ATP-binding cassette A12, ABC2 homolog 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004262 [exp] 512 / 2e-174 AT3G47730 840 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10023613 [exp] 369 / 1e-116 AT3G47730 1360 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10024244 [exp] 366 / 2e-115 AT3G47730 1349 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10023157 [exp] 97 / 1e-20 AT2G41700 1486 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Lus10023612 [exp] 93 / 3e-19 AT3G47780 1202 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Lus10012755 [exp] 90 / 2e-18 AT2G41700 2655 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Lus10027545 [exp] 59 / 8e-09 AT5G52860 781 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10017707 [exp] 59 / 1e-08 AT2G37360 456 / 6e-151 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10029905 [exp] 58 / 1e-08 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G069800 [exp] 359 / 8e-113 AT3G47730 1245 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Potri.015G063500 [exp] 352 / 3e-110 AT3G47730 1288 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Potri.006G049300 [exp] 100 / 2e-21 AT2G41700 2741 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Potri.015G063400 [exp] 93 / 2e-19 AT3G47780 1145 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.012G069700 [exp] 91 / 5e-19 AT3G47780 1139 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.015G027600 [exp] 62 / 6e-10 AT5G52860 733 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Potri.015G036100 [exp] 56 / 7e-08 AT2G37360 276 / 2e-81 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.012G045100 [exp] 54 / 3e-07 AT3G55130 270 / 3e-79 ATP-binding cassette G19, white-brown complex homolog 19 (.1) Potri.013G117700 [exp] 53 / 4e-07 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.001G393300 [exp] 52 / 7e-07 AT1G53270 756 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10042172 pacid=23153548 polypeptide=Lus10042172 locus=Lus10042172.g ID=Lus10042172.BGIv1.0 annot-version=v1.0 ATGTCTTCATTTGCGCCGGCGTTCTTCCTAGCGTTTGCCATGTTTGGATTCGTCTTGCAAATTAGTGCTTTGGTCACAGAGAAGGAGCTCAAGCTTCGTC AGCTCCCTAGTTGTTTTCCTGGTCTTCTTTCTTTTCCAGTTCAATATGGTTGGTTATGCTTTCATGCTGTCAAACTTCATCAGCAAGTCATCTTCAGCCA CAACTGTAGGATTCTCAGTATTCATAGTCGGATTCCTAACTCAGGCAAGCTTCTCCTCACTGCAGTTCAACCCGCAAAAAGCTGGTTCTTAATGCAGACA TCTTCTTACTTCTTGCAGTTTTTTGCCATGGACAACTTCCCCTATACTGATAGCGTTTCAATCACCGTGAGGACTATCTGGTCATTGTTCCCACCAAATC TTCTAACTGTGGCACTGATATGGCTCAGTGATGCTACTGACTATCCCAGCAGTGTCGGTATTAGCTGGAGCGAACGATCAAATTGTCCGCTCAACTCTCC GCAGTGTACAATGACAACAAATGATATCTACAGATGGCTGGCGGCTACAGCTTTACTCTGGTTTGCTCTGGCAATCTACCTTGACAACATAATACCCAAT GCATATGGCGTCAGGAAGTCTGTATTCTACTTCTTGAATCCATCGTACTGGTTTGGGAAGGGTGGAAAGCAGTTGGAAGGAGGTGTTTGTAGTTGTTCTG GCTCGATACCAACACAGGAACATCTTCCTCCAGATGATGAAGATGTGCTTGAAGAGGAGACCACAGTCAAGAGAGATTTACTTGAAGGCACAGTTGATCC AGCTGTTGCAGTTCAGATACGTGGACTTGCAAAGACGTATCCTGGAACCAAGAAGGGTGGTTGGTGCTGCTGCTGCTGTAGTTGCAAGAAGTGTTTACCT TATTACGCTCTTCGGGTTACACCCTGGAAACTTGAGATGATCGGAAAGTTTGAGCCCTTTCTCGGTGTGGTTTGCTTATTGGCATGCCTATATCCTCAGG GCCTCTGGATGAACATTGCAAAGGATCAGTTATTTTGTCTGCTTGGACCAAATGGTGCAGGGAAAACTACAGCAATCAATTGCTTGACTGGGACATCACC AGTAACCAGTGGAGATGCATCAATATATGGGGATTCCGTTAGAAGCAGCGGTGGCATGTCCAGCATCAGAAAGCTGATTGGTGTTTGTCCTCAGCTCTTT GCTAGCATTAAGGGCCTCCCTCCATCAAAGGTTAACCAGGTTGCTGAGGAGTTGTTAGCAAAGGTGAAACTTACCTCTGACGCAACGTTAGCATCCGGGA GAGACAGCGGAGGTATGAAGCGACGGCTCAGTGTTGCAATAGCGCTCATCGGTGACCCAAAGCTACTCATTTTGGACGAACCGAATTTCTTTGAGGAGCT GGAGGCCAGACAAGCTGCATTCGGCATAGGAGACATACAACTCGGCCTTTCGACACTAGAAGAAGTTTTCCTAAGAATAGCCAGGGAAGCTGAGCTAGAA AGTGCTGCCACAGAGGGCCGATTCGTTACTCCGAACTTGACTTCCGGAGCTTTGATTCAGATACCAGTAGGATCTCAATTCATCAGAATCCCGGGCACGG AGTCCTCTGAAAACCCCAGAGGCATCATGGTTGAAGTTTACTGGGAGACGGATGATGCTGGCTCCCTCTGCATTTCCGGTCGCTCCCAAGAAATGCCAGT TCCTCCGAGTGCACAACCGTCGATGCCTGCAACTGCTCCAGCTTCGTGA
AA sequence Show only first row Show all	>Lus10042172 pacid=23153548 polypeptide=Lus10042172 locus=Lus10042172.g ID=Lus10042172.BGIv1.0 annot-version=v1.0 MSSFAPAFFLAFAMFGFVLQISALVTEKELKLRQLPSCFPGLLSFPVQYGWLCFHAVKLHQQVIFSHNCRILSIHSRIPNSGKLLLTAVQPAKSWFLMQT SSYFLQFFAMDNFPYTDSVSITVRTIWSLFPPNLLTVALIWLSDATDYPSSVGISWSERSNCPLNSPQCTMTTNDIYRWLAATALLWFALAIYLDNIIPN AYGVRKSVFYFLNPSYWFGKGGKQLEGGVCSCSGSIPTQEHLPPDDEDVLEEETTVKRDLLEGTVDPAVAVQIRGLAKTYPGTKKGGWCCCCCSCKKCLP YYALRVTPWKLEMIGKFEPFLGVVCLLACLYPQGLWMNIAKDQLFCLLGPNGAGKTTAINCLTGTSPVTSGDASIYGDSVRSSGGMSSIRKLIGVCPQLF ASIKGLPPSKVNQVAEELLAKVKLTSDATLASGRDSGGMKRRLSVAIALIGDPKLLILDEPNFFEELEARQAAFGIGDIQLGLSTLEEVFLRIAREAELE SAATEGRFVTPNLTSGALIQIPVGSQFIRIPGTESSENPRGIMVEVYWETDDAGSLCISGRSQEMPVPPSAQPSMPATAPAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61730		ABCA9, ATATH11	ARABIDOPSIS THALIANA ABC2 HOMO...		Lus10042172 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10037955 [exp]	6.0	0.6740
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Lus10033764 [exp]	8.4	0.6467
					Lus10028050 [exp]	8.6	0.7206
AT2G20410			RNA-binding ASCH domain protei...		Lus10000855 [exp]	9.8	0.6715
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10001383 [exp]	16.9	0.6625
AT5G40960			Protein of unknown function (D...		Lus10012541 [exp]	19.1	0.5951
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Lus10024938 [exp]	25.3	0.5921
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10017904 [exp]	27.2	0.6394
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10002995 [exp]	29.4	0.6135
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10002389 [exp]	35.4	0.6267

Compare expression of checked genes

Lus10042172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.