Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74690 338 / 7e-108 IQD31 IQ-domain 31 (.1) AT1G18840 314 / 5e-99 IQD30 IQ-domain 30 (.1.2) AT2G02790 189 / 9e-52 IQD29 IQ-domain 29 (.1) AT1G14380 181 / 3e-49 IQD28 IQ-domain 28 (.1.2.3) AT1G19870 102 / 2e-22 IQD32 IQ-domain 32 (.1) AT4G14750 88 / 2e-18 IQD19 IQ-domain 19 (.1) AT4G00820 84 / 6e-17 IQD17 IQ-domain 17 (.1) AT3G52290 82 / 3e-16 IQD3 IQ-domain 3 (.1) AT1G01110 82 / 3e-16 IQD18 IQ-domain 18 (.1.2) AT1G72670 81 / 4e-16 IQD8 IQ-domain 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004263 [exp] 969 / 0 AT1G74690 407 / 6e-135 IQ-domain 31 (.1) Lus10030784 [exp] 140 / 3e-35 AT2G02790 214 / 3e-61 IQ-domain 29 (.1) Lus10013261 [exp] 132 / 1e-32 AT1G14380 212 / 7e-61 IQ-domain 28 (.1.2.3) Lus10033167 [exp] 102 / 3e-22 AT1G19870 211 / 4e-57 IQ-domain 32 (.1) Lus10021904 [exp] 89 / 2e-18 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10006613 [exp] 88 / 4e-18 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10010104 [exp] 85 / 6e-17 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10012608 [exp] 85 / 7e-17 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10014870 [exp] 84 / 2e-16 AT2G26180 249 / 5e-74 IQ-domain 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G063600 [exp] 484 / 2e-164 AT1G74690 407 / 2e-135 IQ-domain 31 (.1) Potri.012G069900 [exp] 468 / 2e-158 AT1G74690 387 / 8e-128 IQ-domain 31 (.1) Potri.017G079600 [exp] 226 / 6e-66 AT1G74690 225 / 2e-66 IQ-domain 31 (.1) Potri.005G236200 [exp] 105 / 2e-23 AT1G19870 340 / 2e-104 IQ-domain 32 (.1) Potri.002G025200 [exp] 103 / 7e-23 AT1G19870 315 / 5e-95 IQ-domain 32 (.1) Potri.001G448100 [exp] 91 / 4e-19 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.006G226600 [exp] 88 / 3e-18 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.008G156700 [exp] 86 / 2e-17 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.002G178500 [exp] 86 / 3e-17 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.014G104600 [exp] 85 / 4e-17 AT4G00820 432 / 2e-146 IQ-domain 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10042173 pacid=23153455 polypeptide=Lus10042173 locus=Lus10042173.g ID=Lus10042173.BGIv1.0 annot-version=v1.0 ATGGGCAAGTCACCTGCAAGGTGGCTCAAGAGTGTGCTGTTAGGGAAGAAGCCATCGAAATCCAGTGGCGGTAGAGGGAAGGAGAAAGGTTCAAATGAGA AAGAGGTTCTGGTTTCAGCCAAGGCCTCAGATGCTGATGTGACACTAATCTCTTCTGTGGTTTCCCAACCGGATACCGAGTTTACGGATGTAGTTGAAAG GGGGCCAGAAGCAGAGAACGCACTAATCTCTTCTGTGGTTTCCCAACCGGATACCGAGTTTACGGATATAGTTGAAAGGGGGCGAGAAGCAGAGAACAAG GAAAATGTAAACCCACCACATGATGGTAGTCTCCTGTTAGCTGGAAATCAGGATGATAACTTACAAGGATGTCAGGTTGAAGTTGGAACAGATGACCCAG AAAAGATCATTGAAGAGAATGCTGCAACAGTGGCACAAGCTGCTTTCAGGGGTTACCTGGCACGGCGGGCGTTCCGAGCCCTTAAAGGCATAATAAGACT GCAGGCACTCATCCGTGGACATTTGGTTAGGAGACAAGCCGTCGCCACTTTGTGTTGTATGCTGGGAGTTGTCAAGTTTCAGGCTCTGGCTCGTGGAAAA TTTGTCAGGAACTCAAATATAGGGCAAGAGATACATAAGATTTACGTCTTTGTGAAGCCTCAGGATGGCAAAGCTGTTGATCCTGGTGGTGTTAATGTTA CTCTCCTTGTGGCAAAGCGGTCAACAAACGCATTTGTTCGTAAGCTTGTATTCTCATCACCGAGAATGATGCCCCTAGGCCTGTATTATGACTCTGCTGA ACCAAATTCAGTCTCCAACTGGTTGGAACGCTGGTCAGCATCTTGCTGTTGGAGAACACTACCACAGCCAAAGAAAACCCATCCTTCAAAGCCACAGCGA AAGCAGGGCAATGTTCAAGTGGTTGAAGCTGAAACTACTAAGCCCAAGCGCAGCGTTCGGAGGGTTCCTGCTGCTGCTAGTGCCGACAATAGTACGGTCC AAGCAGCCACTGACTACGAGAAACCCAAGCGCAGCTTCAGGAAGGTTACAAGCCATCCAGTTGAAGCAGTACAGGAAAACCCTCAGAGTGAGCTTGAAAA GGTGAAAAGAAGCTTGAGAAAGGTTCATAACCCTGTTGCTGAGAAAAATATTCAACCTGATATCGAAGCCGAGAAGCCAAGGCAAAGTGTAGAGAAGATG TCAAGAATTCCGATCGAGAAGTTAAAGCCAAGTGCAGAAGATGCTTCAGGCGCTTCAAGTGAGAAACAGGAGGAAACTATAGAACAGGCATCAGGAATGC CAGGCGAGGTTATTTTGGGCCAGCAATTGAGTATTGCAGCTGAGAAGCAAAAGAAAGCGACCAAAATACCATCTGAAGAAGCTGCCGTGGTTCTCAATGA ACCAACTTTCGAGCAGTCTGAATCACCTAATGTGGAGAAGACTCCGGAACCACGACAAAAGGCCGAGATGGACGAAGTTATGCAGAGTGATCAGCCTTCA CTTGAACCAACACCAGCCGTTGAAAATGATGGTAAAGAAGAGACTACTCCATTGACCAATGGAGATCATAACGAGGAACCCGCCAGTAACGAAAATCACA AGTCTGGCAAGAGAGCTTCTACCCAGGCTAATAAGCAAGAACTTCCAGAGAATGGGGTACAGAATAATAGTCCAACAGTCCCGAGTTACATGGCTGCAAC TGCATCTGCTAAGGCCAAGTTGAGAGCTCAGGGATCCCCGAGATTGAGCCAAGATAGTGCCGAGAAAAACAACTCCACTCGGCGACACTCTTTGCCCTCC TCGGCTAATAGCAAGGTTAGCTCTCATTCACCAAGGACACACCGTCCTGCCAATAGTAGTGGTGGCAAGGGGAAAACCAAAGGCGAAAAGGCCGTGCTGT CTTCTAGAGATGGAAATCGTACGAAATACTAA
AA sequence Show only first row Show all	>Lus10042173 pacid=23153455 polypeptide=Lus10042173 locus=Lus10042173.g ID=Lus10042173.BGIv1.0 annot-version=v1.0 MGKSPARWLKSVLLGKKPSKSSGGRGKEKGSNEKEVLVSAKASDADVTLISSVVSQPDTEFTDVVERGPEAENALISSVVSQPDTEFTDIVERGREAENK ENVNPPHDGSLLLAGNQDDNLQGCQVEVGTDDPEKIIEENAATVAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMLGVVKFQALARGK FVRNSNIGQEIHKIYVFVKPQDGKAVDPGGVNVTLLVAKRSTNAFVRKLVFSSPRMMPLGLYYDSAEPNSVSNWLERWSASCCWRTLPQPKKTHPSKPQR KQGNVQVVEAETTKPKRSVRRVPAAASADNSTVQAATDYEKPKRSFRKVTSHPVEAVQENPQSELEKVKRSLRKVHNPVAEKNIQPDIEAEKPRQSVEKM SRIPIEKLKPSAEDASGASSEKQEETIEQASGMPGEVILGQQLSIAAEKQKKATKIPSEEAAVVLNEPTFEQSESPNVEKTPEPRQKAEMDEVMQSDQPS LEPTPAVENDGKEETTPLTNGDHNEEPASNENHKSGKRASTQANKQELPENGVQNNSPTVPSYMAATASAKAKLRAQGSPRLSQDSAEKNNSTRRHSLPS SANSKVSSHSPRTHRPANSSGGKGKTKGEKAVLSSRDGNRTKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10042173 [exp]	0	1
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10022326 [exp]	1.0	0.9553
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10004263 [exp]	1.4	0.9193
AT2G14835			RING/U-box superfamily protein...		Lus10002131 [exp]	2.4	0.9034
AT2G40980			Protein kinase superfamily pro...		Lus10015685 [exp]	2.6	0.8892
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Lus10023115 [exp]	2.8	0.8993
AT2G15240			UNC-50 family protein (.1)		Lus10027865 [exp]	3.6	0.8748
AT1G14380		IQD28	IQ-domain 28 (.1.2.3)		Lus10013261 [exp]	4.2	0.8940
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10003873 [exp]	4.5	0.8942
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Lus10034184 [exp]	4.7	0.8572
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10039895 [exp]	8.5	0.8755

Compare expression of checked genes

Lus10042173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.