Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62530 856 / 0 ATP5CDH, ALDH12A1 ARABIDOPSIS THALIANA DELTA1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE, aldehyde dehydrogenase 12A1 (.1) AT1G23800 70 / 2e-12 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT1G54100 68 / 6e-12 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2) AT1G74920 66 / 3e-11 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT2G24270 62 / 5e-10 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT3G48000 61 / 1e-09 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT3G48170 58 / 1e-08 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT2G14170 57 / 2e-08 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3) AT3G66658 49 / 9e-06 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT1G79440 48 / 1e-05 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004264 [exp] 989 / 0 AT5G62530 928 / 0.0 ARABIDOPSIS THALIANA DELTA1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE, aldehyde dehydrogenase 12A1 (.1) Lus10007084 [exp] 77 / 1e-14 AT2G14170 850 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Lus10020459 [exp] 76 / 2e-14 AT2G14170 861 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Lus10042149 [exp] 75 / 4e-14 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10036288 [exp] 71 / 1e-12 AT2G24270 929 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Lus10003640 [exp] 69 / 5e-12 AT2G24270 931 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Lus10034115 [exp] 66 / 5e-11 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1) Lus10004239 [exp] 65 / 6e-11 AT1G74920 667 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10043470 [exp] 59 / 5e-09 AT1G74920 818 / 0.0 aldehyde dehydrogenase 10A8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G064200 [exp] 875 / 0 AT5G62530 963 / 0.0 ARABIDOPSIS THALIANA DELTA1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE, aldehyde dehydrogenase 12A1 (.1) Potri.015G070600 [exp] 70 / 2e-12 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.018G020600 [exp] 69 / 4e-12 AT2G24270 889 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.001G242333 [exp] 67 / 1e-11 AT2G14170 895 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.006G186800 [exp] 67 / 1e-11 AT2G24270 951 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.001G283100 [exp] 67 / 2e-11 AT2G14170 891 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.001G167100 [exp] 67 / 2e-11 AT1G54100 823 / 0.0 aldehyde dehydrogenase 7B4 (.1.2) Potri.012G075600 [exp] 66 / 4e-11 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.018G109700 [exp] 66 / 4e-11 AT2G24270 950 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.003G067700 [exp] 64 / 1e-10 AT1G54100 850 / 0.0 aldehyde dehydrogenase 7B4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10042174 pacid=23153695 polypeptide=Lus10042174 locus=Lus10042174.g ID=Lus10042174.BGIv1.0 annot-version=v1.0 ATGTACAGGCCACTTGTTGCCAGGTTGCTGCGAGACAGCGTCGCTACCCGAAAGGGCTCGTCCCATTTCGCCCGGAGGTTTTCTCATTCTTTGCCCTTCG CGACCGTAGATGCGGAGGAGCTATCTGGTGCTAAACCAGCTGAAGTGCTTAACTTGGTTCAGGGGAAATGGGGAGGTTCTTCCAGTTGGCACACGGTGGT TGATCCTTTAAACGGAGAACCGTTTATCAAAGTTGCTGAAGTAGACGAGACAGAAATCAAGCCATTTGTGGAGAGCTTGTGCAAGTGCCCTAAACATGGA CTGCACAACCCCTTTAAGTCGCCTGAAAGGTATCTTCTGTATGGGGACATATCTACGAAGGCAGGGCACATGCTTTCCATACCAAAGGTGTCGGAGTTCT TTGCAAGGTTAATACAAAGAGTTTGCCCGAAGAGTTACCACCAGGCTCTTGGTGAAGTTCAAGTCACGCAGAAGTTTTTTGAGAACTTCACTGGTGATCA GGTTCGTTTCTTGGCAAGATCATTTGGAGTGCCGGGAAACCATCTTGGTCAGCAAAGTAATGGCTTCCGATGGCCTTTTGGTCCTGTTGCAATAATCACT CCATTCAATTTCCCACTAGAGATTCCGGTTCTTCAGTTGATGGGTGCTTTATACATGGGCAACAAACCCCTTCTTAAAGTTGATAGCAAGGTGTCCATTG TTATGGAACAAATGATGAGACTACTTCACTATTGCGGTTTGCCTGTGGAAGATGTTGACTTTGTCAACTCGGATGGGAAGGCTATGAACAAGATACTACT GGAGGCAAATCCCCGGATGACATTGTTTACTGGTAGCTCAAGAGTTGCGGAGAAGTTGGCTCTTGACTTAAAGGGCCGCATCAAGTTGGAAGATGCAGGA TTTGACTGGAAAATTCTAGGGCCTGATGTCAATGAGGCAGACTATGTTGCTTGGGTGTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGCTCTG CACAATCCATTCTATTCATGCACGAGAACTGGGCTGCTACTCCACTCATTTCGAAATTGAAGGAGCTTGCAGAGAGGAGAAAGTTGGAAGATCTAACTGT TGGCCCTGTCCTCACTGTTACCACCGAAGCGATGCTGGATCACCTGAACAAGTTGCTTCAGATACCGGGAGCTAAGCTGCTCTTTGGCGGCAAGCCTCTG GAGAATCATACCATTCCATCCATATATGGTGCCGTGAAACCAACAGCCGTGTATGTCCCTCTGGAAGAAATTCTGAAAGAGGGTAACTATGAACTTGTTA CAAAGGAAATCTTCGGACCATTCCAGGTTGTTACGGAGTACAAGAACAGTCAACTTCCTATGGTTCTGGAAGCTTTGGAGAGGATGCACGCACATTTAAC AGCTGCTGTAGTTTCGAACGATCAGCTGTTTTTGCAGGCAAGATCACAGCTTTTAAACTCGAAATCAATGTGTTATTTTCACTTATGTATACTAGTGATG CGATTAAAAGAGACCTTGATCCCACAGGAAGTCATCGGGAACACTGTGAATGGCACAACTTATGCCGGGTTGCGAGCAAGAACGACAGGAGCTCCGCAGA ATCATTGGTAA
AA sequence Show only first row Show all	>Lus10042174 pacid=23153695 polypeptide=Lus10042174 locus=Lus10042174.g ID=Lus10042174.BGIv1.0 annot-version=v1.0 MYRPLVARLLRDSVATRKGSSHFARRFSHSLPFATVDAEELSGAKPAEVLNLVQGKWGGSSSWHTVVDPLNGEPFIKVAEVDETEIKPFVESLCKCPKHG LHNPFKSPERYLLYGDISTKAGHMLSIPKVSEFFARLIQRVCPKSYHQALGEVQVTQKFFENFTGDQVRFLARSFGVPGNHLGQQSNGFRWPFGPVAIIT PFNFPLEIPVLQLMGALYMGNKPLLKVDSKVSIVMEQMMRLLHYCGLPVEDVDFVNSDGKAMNKILLEANPRMTLFTGSSRVAEKLALDLKGRIKLEDAG FDWKILGPDVNEADYVAWVCDQDAYACSGQKCSAQSILFMHENWAATPLISKLKELAERRKLEDLTVGPVLTVTTEAMLDHLNKLLQIPGAKLLFGGKPL ENHTIPSIYGAVKPTAVYVPLEEILKEGNYELVTKEIFGPFQVVTEYKNSQLPMVLEALERMHAHLTAAVVSNDQLFLQARSQLLNSKSMCYFHLCILVM RLKETLIPQEVIGNTVNGTTYAGLRARTTGAPQNHW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62530		ATP5CDH, ALDH12...	ARABIDOPSIS THALIANA DELTA1-PY...		Lus10042174 [exp]	0	1
AT5G62530		ATP5CDH, ALDH12...	ARABIDOPSIS THALIANA DELTA1-PY...		Lus10004264 [exp]	3.0	0.9652
AT5G38710			Methylenetetrahydrofolate redu...		Lus10003051 [exp]	4.0	0.9657
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	4.5	0.9751
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10019087 [exp]	4.5	0.9715
AT4G26260		MIOX4	myo-inositol oxygenase 4 (.1.2...		Lus10012923 [exp]	4.6	0.9669
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10003665 [exp]	9.2	0.9670
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	10.1	0.9708
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Lus10017516 [exp]	10.7	0.9673
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10007247 [exp]	11.0	0.9683
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10041699 [exp]	11.2	0.9581

Compare expression of checked genes

Lus10042174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.