Plant FIBer expression Database

Lus10042176 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G62760 352 / 2e-113 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004265
[exp]
960 / 0 AT5G62760 427 / 1e-140 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G064600
[exp]
452 / 7e-152 AT5G62760 474 / 2e-159 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Lus10042176 pacid=23153783 polypeptide=Lus10042176 locus=Lus10042176.g ID=Lus10042176.BGIv1.0 annot-version=v1.0
ATGCGCAATCATGGTAATGGCAGTAGTAATGGATATGTTAGTGAATTCGATGGGAGTAATAAGAGACCTAGGGTTGATGCAACTGAATCCGGCGACTCTT
CCTTTCACGATGAGCGTAGATTGAAGCTTATTCGCGATCACGGCGGTAGGAATGCAGTGCCACCGAAAGGGGAATCAGTTGCTATAGGAAACGGCAGTTT
TCAAAATAATGGGGTTGGTCCGCACGGGGAATTATTGCAGACCGATGTTCATTATGGTCCCAGTTCCAATGCACTTGCTGGACATTCTAATTGGCAAAAC
CATATGCCCCCTCCTCAGCTTCCCAATGGGGTGGCGAATCACAGTAGAAACGAATTAAGGAACGGCTATGGTGTGCAGAACTTGAATGAACAAAGAGGTT
ACCTGCCTCACCATGAGAGGCTTCTACCACCTCCTCTTCCCACTTCACCTCCTCCGCCTCTTCCACACGAATTGCTTAAAGGATCTTCACCCCCAACGCT
GTTTCCTATTCCGATTAGCTCTCCAGCACCTAGTTGCTATGGATATAGTACTCCTCCTCCCCGTGCTTCAACTGCTTATGCATCTGAGGGCCATCGGGAG
GATCAAAGATTTCTACGAAAGGAAGTACCTCCATCAAAGCCAATGATCATTGATGCTTCTTACTTATTTAAGCAACCTTATCGATCCAGCCGCCCTGATT
ATATTGTGATTATACTTCGTGGGCTTCCTGGTAGTGGTAAAAGTTACTCTGCCAAGATGATGAGAGATATGGAGGTTGAAGGTGGTGGGGATGCACCAAG
AATTCACTCTATGGATGATTATTTCATGACCGAAGTGGAAAAGGTAGAAGAGAGTGATGCTTCAAAATCTTCTAGCGCAGCTAGAAACAAGAAACCTGCT
GTGAAGACGGTTATGAAATATTATTATGAGCCTGAAATGGAAGAGGTGTACCGAGAAAGCATGCTGAAAGCATTCAAGAAAACTCTGGAGGAGGGAACGT
TCAGGCTCGTGATTGGTATGATAAGATCGGGCTATGAAGTCTACATATCAGAAGCTGCTTATAAAGATCCTGAGGGTTGCACAGCTAGGAACGTGCATGG
TTTTACCTTGGATGATGTGCAGAAAATGGCTGGGCAGTGGGAGGAGGCTCCATCTATGTATATGCAACTTGATGTCAAGTCATTATTTCATGGGGATAAC
TTGAAAGGAAATGGAATCCAAGAGGTTGACATGGATACTGAAGAAGGAGATGACAATCATTCATCGCAAGTACAGGAAAGACATGCCGACAAGACAACAG
TTCCCCCGGTTGAGGGCATAGCCCAAGCTTCAGTTTCTCCAAAAGGCGGGAAAACACAGGACGCTGTCGAAGACCAAACAGGAGTAAAAGAGCTTGGTAA
AAGTAAGTGGTCAGAAAATTTTGACGAGGATGATAGGAAGGGACATGGAAAGACCAAGGGTAATGTAAATGCTCTTTCTGGACTGTTTCGACCTTGTGGG
AAAAAAAGAAAATCTGTGCGTTGGAGTGACCAGGCCGCCTCTATTGGGTTCTCCATAGGTGCAGCAAAGACGGGAAATATCCATTCTTTAGTGATTGGCC
CGGGGCCTGGATACAACTTGAAGGCCAATCCATTGCCTGAAGAGGAGATTCCGAGCTCAAGACCATCACAGAGCAGCAGGAAGTCGAGGAGGCAGACTGC
ATTCCAGGATCGACTAAGAGCCGAGCAGGAATCGTTCAAAGCGATCTTCGATAGGAGGAAACAGCGGATCGGCGTACTTGATGTGGACGAGGAATGA
AA sequence
>Lus10042176 pacid=23153783 polypeptide=Lus10042176 locus=Lus10042176.g ID=Lus10042176.BGIv1.0 annot-version=v1.0
MRNHGNGSSNGYVSEFDGSNKRPRVDATESGDSSFHDERRLKLIRDHGGRNAVPPKGESVAIGNGSFQNNGVGPHGELLQTDVHYGPSSNALAGHSNWQN
HMPPPQLPNGVANHSRNELRNGYGVQNLNEQRGYLPHHERLLPPPLPTSPPPPLPHELLKGSSPPTLFPIPISSPAPSCYGYSTPPPRASTAYASEGHRE
DQRFLRKEVPPSKPMIIDASYLFKQPYRSSRPDYIVIILRGLPGSGKSYSAKMMRDMEVEGGGDAPRIHSMDDYFMTEVEKVEESDASKSSSAARNKKPA
VKTVMKYYYEPEMEEVYRESMLKAFKKTLEEGTFRLVIGMIRSGYEVYISEAAYKDPEGCTARNVHGFTLDDVQKMAGQWEEAPSMYMQLDVKSLFHGDN
LKGNGIQEVDMDTEEGDDNHSSQVQERHADKTTVPPVEGIAQASVSPKGGKTQDAVEDQTGVKELGKSKWSENFDEDDRKGHGKTKGNVNALSGLFRPCG
KKRKSVRWSDQAASIGFSIGAAKTGNIHSLVIGPGPGYNLKANPLPEEEIPSSRPSQSSRKSRRQTAFQDRLRAEQESFKAIFDRRKQRIGVLDVDEE

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G62760 P-loop containing nucleoside t... Lus10042176
[exp]
0 1
AT5G62760 P-loop containing nucleoside t... Lus10004265
[exp]
1.0 0.8887
AT1G03370 C2 calcium/lipid-binding and G... Lus10001915
[exp]
2.4 0.8783
AT5G64560 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) Lus10008803
[exp]
3.5 0.8631
AT2G37840 Protein kinase superfamily pro... Lus10021493
[exp]
5.0 0.8552
AT2G33435 RNA-binding (RRM/RBD/RNP motif... Lus10011791
[exp]
5.3 0.8457
AT4G00060 MEE44 maternal effect embryo arrest ... Lus10009279
[exp]
8.0 0.8189
AT5G26240 ATCLC-D, CLC-D chloride channel D (.1) Lus10010531
[exp]
8.8 0.8648
AT5G27410 D-aminoacid aminotransferase-l... Lus10029984
[exp]
10.0 0.8345
AT2G17930 Phosphatidylinositol 3- and 4-... Lus10041911
[exp]
16.4 0.8353
AT5G41370 XPB1, ATXPB1 ARABIDOPSIS HOMOLOG OF XERODER... Lus10032287
[exp]
16.6 0.8041

Lus10042176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.