Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75640 1108 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT4G36180 1100 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 430 / 2e-132 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 423 / 9e-130 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 379 / 6e-113 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G34110 370 / 2e-110 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17750 369 / 8e-110 AtPEPR2 PEP1 receptor 2 (.1) AT5G07180 342 / 3e-101 ERL2 ERECTA-like 2 (.1) AT1G35710 344 / 7e-101 Protein kinase family protein with leucine-rich repeat domain (.1) AT4G08850 338 / 4e-99 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033926 [exp] 1706 / 0 AT1G75640 1348 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10033924 [exp] 1576 / 0 AT1G75640 1332 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10004266 [exp] 1073 / 0 AT4G36180 1061 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10039030 [exp] 380 / 2e-113 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10000509 [exp] 372 / 3e-111 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10020935 [exp] 357 / 4e-106 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031689 [exp] 343 / 3e-101 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10011387 [exp] 342 / 1e-100 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019036 [exp] 341 / 3e-100 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G235100 [exp] 1281 / 0 AT1G75640 1231 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G027400 [exp] 1266 / 0 AT1G75640 1275 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G014700 [exp] 1021 / 0 AT4G36180 1298 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.012G139000 [exp] 375 / 1e-110 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.015G141200 [exp] 360 / 2e-105 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G065400 [exp] 355 / 2e-104 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G169600 [exp] 355 / 4e-104 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.019G021700 [exp] 343 / 3e-101 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G472900 [exp] 343 / 9e-100 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.013G048800 [exp] 336 / 2e-98 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10042177 pacid=23153956 polypeptide=Lus10042177 locus=Lus10042177.g ID=Lus10042177.BGIv1.0 annot-version=v1.0 ATGGCAACGGCTATTTCCTTCTTCTTCTTCTACATTATCTCCCTCTTTCTCACCAGTACAAACATTGCCGCCGCCGCCGCTCCGGTGGTCTCCGAGATCC ATGCATTGACCGCTTTCAAACTCCCTCTCCACGACCCTCTCGGCGCCTTAGATTCCTGGGATTCCTCCCCCCCAGCCGCTCCCTGCGACTGGCGCGGCAT TTCCTGTTTCAACGGCCGAGTTCGCGAGCTCCGCGTGCCTCAGCTCCAACTCGCTGGCCCACTCACTTCACACCTTGGTGAGTTACGCCAGCTCAGGAAG CTTAGCCTTCACTCCAACAACTTCAACGGCTCCATACCCAGCTCCCTCTCTCACTGCTCTCTCCTCCGAGCCCTCTACCTTGACTACAATTCTCTCTCCG GCGACCTCCCGCTTTCCCTGCTCAATCTCACCAATCTCCAGGTCTTTACTGTCGCTTCCAATTTCCTCTCCGGGAGAATCCCTACTACTACTGGATTCTC GGTTTCCCTCCGATTCCTCGACTTGTCCTCCAACTACTTCTCCGGAGACCTACCCTCCAACTTCTCTTCGGATTCCCAGCTTCAGCTTGTTAATCTCTCC TTCAACAACTTCTCTGGTGAGGTTCCGGCAAGTATTGGTCAGCTCCAGGGGCTTCAGTACTTGTCGCTTGATTCCAACAGCCTCTACGGTACTCTGCCGT CGGCGATTTCCAACTGTTCGTCTCTTGTGCATCTGAGCGTCCAGGATAACGCTCTGAGAGGACTGATTCCAGCGACCATCGGCTCGATTCCGAATCTCCA GGCGCTTTCCCTTTCTCGGAACGAGCTCTCCGGCTCTATTCCGTCGAGTATTTTCTGCAATGTCCGGGGCAATTTTACGGCGGGGCTTCGAATTCTGGAA TTAGGGTTTAATGCGCTCACGGGAATCGCTGAGCCGCCAAAGGACGGAGGAAGATGTGTGAGTTCCTTACAAATTATAGACGTTCACGAGAACCGCATTA ACGGCGTGTTCCCTACCTGGTTGACTAACATCACCACACTTGAAGTCATTCAACTTTCTCGAAACTTCTTCGCCGGATTCTTCCCGGCAGGGATCGGAAA CCTTTCCCGGTTACGCGAGCTAAGAGCGGCCAGCAATTTGTTCAACGGCAGTCTCCCAACTGACATCGGAAAATGTACTTCTCTACAAGTTCTTGACATT GGAGAGAATCGATTCTCCGGTGAGATTCCTTCCTTCCTCACTGGCTTACTCGGCTTGAGAAGTCTTTCCTTGGGAGGAAATCTGTTTTCCGGTCACCTAC CTACCGGCTTTCGCAACTTGGTTGAGCTAAAAACGTTGAACTTAAGCGACAATGATCTAGAAGGAAGTTTTCCGGAGGAGATACTAAGAATGGCGAATCT GAGCACATTGAATCTCAGCCGCAATCAATTTGGTGGCCAAGTTCCTTCGAGTATAGGAGACCTAAAAGGATTACAGGTGTTGAACTTAAGCGCTTGCGGG TTTTCAGGGAAGATTCCGGTGAGCATTGGTGGATTGGTGAAGCTGGCAACTCTAGATTTGAGCAGACAAAATTTGTCCGGCGAATTACCTGTAGAGCTGT TTGGTTTACCAAGTTTGGAAGTCATTCACTTGGAAGAGAACAACTTATCAATGGATATTCCAGAGGGCTTTAGCAGCCTAGTCAGTCTGCAATATCTCAA TCTTACTTCCAATTCATTCAGCGGCGAGATCCCGGGGACTTATGGGTTTCTGAGGTCGTTGACTGTTCTTTCATTGTCAAAGAATCGCATTGCAGGGAAG ATTCCAGGGGAGCTTGGCAACTGTACAAGTCTCCAGGTCCTCGAGCTTCGTTCAAATCGTTTAACTGGCGAAATCCCAGGTGACGTATCGCATTTATCTC ATCTGTACCGGCTGGATTTGGGGCAGAATAGTTTGAGAGGAGAAATTCCAGCGGAGATCGACAAATGCTCTTCTCTATCATCTCTTCTTTTGGATGACAA TGAACTATCAGGCAGCATTCCAAAGTCATTATCCAAGCTATCCAATTTAACAGCTCTCAACCTTTCGTCCAACAGTTTGAGTGGACCCATCCCAGCCAAC ATTTCATCAATCACTGGGTTGAATTACTTGAATTTATCAGGGAACAGTTTGGAAGGTGAGACTGTGAAGAAGAGGAAGCTGAGGAAACTAATTCTGTTCA TAGCTGTTATCACTGGTGGAAGTTTATTTCTAGCATTGTGTTGCTCAGGTTACATTTACAGCCTTCTCCGGTGGCGAACCAAGCTCCGGGAATTTGCAGC CGGGAAGAAGCCAAGTCCTAATCGAGCAAGTTCAGGAACAGACAGAGGCAGAGGAAGTAATGGTGGAGAGAACAATGGAGGGCCAAAGCTAGTAATGTTC AACAACAAGATAACCTATGCAGAAACCATCGAGGCGACGAGGAATTTCGACGAGGAAAACGTTTTAAGCAGGGGAAGATACGGGTTAGTGTTTAAATCAT CGTACCAAGACGGAATGGTGGTGGCTATCCGTCGCCTCCTGGACGGATCTACAGTTGAGGAGGCCACATTCCGCAAGGAAGCAGAATCCTTGGGCAGAGT AAAGCACCGTAACTTAACAGTCCTGCGAGGCTATTACGCCGGTCCGCCACCGGATGTAAAACTTCTGGTTTACGATTACATGCCCAATGGAAACTTAGCT ACATTGCTTCAGGAAGCTTCACACCAAGATGGCCATGTCCTGAACTGGCCAATGCGCCACTTGATTGCTTTAGGCATAGCTCGTGGCCTAGCTTTCCTGC ACTCTATCACTATGGTCCACGGGGATCTCAAGCCGATGAACGTACTATTTGATGCAGATTTCGAAGCACATTTGTCCGAATTCGGACTGGATAAGCTTGC CATTCCAGCACCAAAGGAAGCTTCATCCTCTGCAGCCCCAGTAGGGTCGGTAGGGTACGTGGCACCGGAGGCGGTGCTGACTGGCGAGGCAACAAAGGAA GCAGACGTTTACAGCTTTGGGATAGTGTTGCTGGAGATACTGACTGGGAAGAAACCGGCGATGTTCAATCAAGAGGGCGATGAAGACTTAGTGAAGTGGG TGAAGAAGCAGCTGCAGACGGGGCAAGTATCGGAGCTGTTGGAGCCCGGGTTGCTGGAGCTTGACCCGGAATTGTCAGAATGGGAGGAGTTTTTGTTGGG GGTCAAAGTTGGACTTTTGTGTACGGCTGGTGATCCGGTTGATCGGCCGTCGATGAGTGACGTGGTGTTCATGCTAGAAGGTTGCAGGGTTGGTCCGGAG ATGCCTTCCTCAGCTGATCCCACCTCGCTGCCGTCGCCAGCAGTAGTCGTGTGA
AA sequence Show only first row Show all	>Lus10042177 pacid=23153956 polypeptide=Lus10042177 locus=Lus10042177.g ID=Lus10042177.BGIv1.0 annot-version=v1.0 MATAISFFFFYIISLFLTSTNIAAAAAPVVSEIHALTAFKLPLHDPLGALDSWDSSPPAAPCDWRGISCFNGRVRELRVPQLQLAGPLTSHLGELRQLRK LSLHSNNFNGSIPSSLSHCSLLRALYLDYNSLSGDLPLSLLNLTNLQVFTVASNFLSGRIPTTTGFSVSLRFLDLSSNYFSGDLPSNFSSDSQLQLVNLS FNNFSGEVPASIGQLQGLQYLSLDSNSLYGTLPSAISNCSSLVHLSVQDNALRGLIPATIGSIPNLQALSLSRNELSGSIPSSIFCNVRGNFTAGLRILE LGFNALTGIAEPPKDGGRCVSSLQIIDVHENRINGVFPTWLTNITTLEVIQLSRNFFAGFFPAGIGNLSRLRELRAASNLFNGSLPTDIGKCTSLQVLDI GENRFSGEIPSFLTGLLGLRSLSLGGNLFSGHLPTGFRNLVELKTLNLSDNDLEGSFPEEILRMANLSTLNLSRNQFGGQVPSSIGDLKGLQVLNLSACG FSGKIPVSIGGLVKLATLDLSRQNLSGELPVELFGLPSLEVIHLEENNLSMDIPEGFSSLVSLQYLNLTSNSFSGEIPGTYGFLRSLTVLSLSKNRIAGK IPGELGNCTSLQVLELRSNRLTGEIPGDVSHLSHLYRLDLGQNSLRGEIPAEIDKCSSLSSLLLDDNELSGSIPKSLSKLSNLTALNLSSNSLSGPIPAN ISSITGLNYLNLSGNSLEGETVKKRKLRKLILFIAVITGGSLFLALCCSGYIYSLLRWRTKLREFAAGKKPSPNRASSGTDRGRGSNGGENNGGPKLVMF NNKITYAETIEATRNFDEENVLSRGRYGLVFKSSYQDGMVVAIRRLLDGSTVEEATFRKEAESLGRVKHRNLTVLRGYYAGPPPDVKLLVYDYMPNGNLA TLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHSITMVHGDLKPMNVLFDADFEAHLSEFGLDKLAIPAPKEASSSAAPVGSVGYVAPEAVLTGEATKE ADVYSFGIVLLEILTGKKPAMFNQEGDEDLVKWVKKQLQTGQVSELLEPGLLELDPELSEWEEFLLGVKVGLLCTAGDPVDRPSMSDVVFMLEGCRVGPE MPSSADPTSLPSPAVVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36180			Leucine-rich receptor-like pro...		Lus10042177 [exp]	0	1
AT3G06868			unknown protein		Lus10024784 [exp]	1.0	0.9654
AT5G25590			Protein of unknown function (D...		Lus10022116 [exp]	2.4	0.9574
AT1G57800		ORTH3, VIM5	VARIANT IN METHYLATION 5, ORTH...		Lus10038731 [exp]	2.4	0.9518
AT4G20940			Leucine-rich receptor-like pro...		Lus10038544 [exp]	2.8	0.9549
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10031539 [exp]	3.9	0.9530
AT5G19340			unknown protein		Lus10041215 [exp]	6.3	0.9501
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10020813 [exp]	6.7	0.9549
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10003750 [exp]	7.4	0.9483
AT2G45260			Plant protein of unknown funct...		Lus10008587 [exp]	7.9	0.9510
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10000986 [exp]	9.8	0.9474

Compare expression of checked genes

Lus10042177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.