Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74730 145 / 7e-44 Protein of unknown function (DUF1118) (.1) AT5G08050 57 / 2e-10 Protein of unknown function (DUF1118) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004269 [exp] 264 / 9e-91 AT1G74730 199 / 3e-65 Protein of unknown function (DUF1118) (.1) Lus10040515 [exp] 63 / 3e-12 AT5G08050 167 / 7e-53 Protein of unknown function (DUF1118) (.1) Lus10021151 [exp] 57 / 3e-10 AT5G08050 143 / 1e-43 Protein of unknown function (DUF1118) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G065100 [exp] 182 / 1e-58 AT1G74730 142 / 7e-43 Protein of unknown function (DUF1118) (.1) Potri.012G070600 [exp] 152 / 7e-47 AT1G74730 132 / 5e-39 Protein of unknown function (DUF1118) (.1) Potri.015G058600 [exp] 61 / 1e-11 AT5G08050 119 / 2e-34 Protein of unknown function (DUF1118) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06549 [flax] [poplar] DUF1118 Protein of unknown function (DUF1118)
Representative CDS sequence Show only first row Show all	>Lus10042179 pacid=23154006 polypeptide=Lus10042179 locus=Lus10042179.g ID=Lus10042179.BGIv1.0 annot-version=v1.0 ATGGCGATGACGGTGATTGCTGCTCAGCCAACTCCCACCGCTTATAATCTCCTCCGTGGTGGACAGAACCCGACCAAACATTTCTTATCCACCACCAAGC TCCCTTCTCCTGGAAGAAAACCCCTCTCTATCGTGGCCATGGCCCCTCAAAAGAAGGTGAACAAGATGGACAACGGGTGGAAGAAGCAGTGGTACGGCGC CGGGATATTCTACGAGAGCGGCGAGGAGCTGGAGGTTGACGTGTTCAAGAAGCTGGAGAAGCGTAAAGTTCTGAGCAGCGTCGAGAAGGCAGGACTTCTC TCCAAGGCCGAGGAGCTTGGTGTGACGCTGTCGTCGATCGAGAAGCTAGGGTTGTTCTCCAAGGCAGAGGAATTGGGGCTTCTCAGCTTGTTGGAGAATG TGGCGGCAGTTTCCCCTGCTGCGCTGGCCTCGGCCGCGCTTCCAGCATTTCTGGCGGCGGTGGCGGCGATCGTGGTGATTCCTGATGATTCGACGGCGCT GGTGGTGGCCCAGACTGTTGTGGCTGGGACGCTGGGGTTGGGCGCTGCTGGACTGTTTGTTGGATCCATTGTGCTTGAAGGGCTGCAAGAAGCTGATTGA
AA sequence Show only first row Show all	>Lus10042179 pacid=23154006 polypeptide=Lus10042179 locus=Lus10042179.g ID=Lus10042179.BGIv1.0 annot-version=v1.0 MAMTVIAAQPTPTAYNLLRGGQNPTKHFLSTTKLPSPGRKPLSIVAMAPQKKVNKMDNGWKKQWYGAGIFYESGEELEVDVFKKLEKRKVLSSVEKAGLL SKAEELGVTLSSIEKLGLFSKAEELGLLSLLENVAAVSPAALASAALPAFLAAVAAIVVIPDDSTALVVAQTVVAGTLGLGAAGLFVGSIVLEGLQEAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74730			Protein of unknown function (D...		Lus10042179 [exp]	0	1
AT1G74730			Protein of unknown function (D...		Lus10004269 [exp]	1.0	0.9769
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10001278 [exp]	3.2	0.9664
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10022632 [exp]	3.9	0.9594
AT3G27925		DEGP, DegP1, DE...	DegP protease 1 (.1)		Lus10022234 [exp]	4.2	0.9318
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10003328 [exp]	4.5	0.9582
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10021115 [exp]	6.3	0.9592
AT5G38410			Ribulose bisphosphate carboxyl...		Lus10017597 [exp]	6.5	0.9520
AT3G12345			unknown protein		Lus10040344 [exp]	7.4	0.9416
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10009471 [exp]	8.0	0.9514
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Lus10001525 [exp]	8.8	0.9522

Compare expression of checked genes

Lus10042179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.