Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01470 155 / 3e-45 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT1G69780 134 / 3e-37 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT5G65310 134 / 3e-37 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT5G15150 135 / 4e-37 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT3G01220 132 / 3e-36 HD ATHB20 homeobox protein 20 (.1) AT2G22430 130 / 1e-35 HD ATHB6 homeobox protein 6 (.1) AT4G40060 129 / 5e-35 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT3G61890 114 / 4e-30 HD ATHB12, ATHB-12 ARABIDOPSIS THALIANA HOMEOBOX 12, homeobox 12 (.1) AT1G27045 114 / 4e-30 ATHB54 homeobox protein 54, Homeobox-leucine zipper protein family (.1) AT1G26960 114 / 6e-30 HD ATHB23 homeobox protein 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004270 [exp] 472 / 6e-169 AT3G01470 152 / 5e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10033102 [exp] 241 / 1e-78 AT3G01470 151 / 4e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036674 [exp] 233 / 5e-75 AT3G01470 153 / 8e-45 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036709 [exp] 152 / 1e-43 AT3G01470 139 / 2e-39 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10037218 [exp] 151 / 1e-43 AT3G01470 140 / 7e-40 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10022225 [exp] 150 / 2e-43 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10013277 [exp] 150 / 4e-43 AT3G01470 130 / 2e-36 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10030800 [exp] 148 / 1e-42 AT3G01470 135 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10008795 [exp] 148 / 2e-42 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G065400 [exp] 299 / 5e-101 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.012G070900 [exp] 278 / 2e-92 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.008G194400 [exp] 144 / 1e-40 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.002G100600 [exp] 130 / 1e-35 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.017G081700 [exp] 130 / 1e-35 AT5G15150 248 / 5e-81 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.007G097100 [exp] 130 / 2e-35 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.005G071900 [exp] 130 / 3e-35 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.008G148200 [exp] 128 / 6e-35 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1) Potri.005G161500 [exp] 127 / 1e-34 AT4G40060 187 / 4e-58 homeobox protein 16 (.1) Potri.010G093400 [exp] 128 / 2e-34 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02183 [flax] [poplar] HALZ Homeobox associated leucine zipper CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10042180 pacid=23153922 polypeptide=Lus10042180 locus=Lus10042180.g ID=Lus10042180.BGIv1.0 annot-version=v1.0 ATGTCGGCGATGGCTAACGATGTCGGCGGCGGCGGTGGAGGAGGGACTTGTGTTACTAATTTGCCTCCTGCTCTGCATCGGAACAACAAGAGAAGCCATC AAAGCGCTTCTCAGCCCCTTGATTCGTTTTTCCTTCCTGGGTCTTCTCCTTCTTTCCTCGGTCCAAGATCAATTGTCCGATTTGATGATGCAAGCCAAGT AAACGGATCATCATCATCATCAAGCAAGCCCTTCTTCTGCTCATTTGAACTGGATGAGAATGGGGACGATGATCTGGATGAGTATTTCCGGCAACCGGAG AAGAAGAGGAGACTTTCAGTAGAACAAGTCCAGTTCCTCGAGAAAAGCTTCGAGGTCGACAACAAGCTCGAGCCAGATCGAAAAGTCCAGCTTGCTAAGG ACCTTGGCCTCCAGCCTAGGCAGGTTGCTATATGGTTCCAGAACCGCCGCGCTAGGTGGAAGACTAAACAGCTCGAGAAAGATTACGATACTTTGCAATC GAGCTTCGACACCCTCCAGGCCGACTATGCTGGCCTTCTCAAGGAGAAGAACCACTTGAAATCCGAGATCGATTCGCTGACAGAGAAGCTACAGCAGAAG GAGAGAGCGAAAGCATTTTCAGACATGTCTCAAGGCCAAATGGAGAAGCCAGCTCAGCCATGTAAGCAGGAAGACATAAGCTCAGCAAGAAGTGATATTT TCGACTCGGAAAGCCCGCATTACACGGATGGTGTGCACTCTTCGCTGCTGGAGGCTGGCGATTCTTCCTATGTGTTCGAACCGGACCAGTCGTCTGATCT ATCTTCGCAGGACGAAGAAGATAACTTGAGCAGGAATCTATTGCCTGCTGCAGCATCCTATGTGCTGTTCCCAAAGCTGGAGGATGAGGATGATTATTCA GATCCATCTGCAAGTTTTGAAGATAATGCCTTTTGGTCCTCTTGGCCATACTGA
AA sequence Show only first row Show all	>Lus10042180 pacid=23153922 polypeptide=Lus10042180 locus=Lus10042180.g ID=Lus10042180.BGIv1.0 annot-version=v1.0 MSAMANDVGGGGGGGTCVTNLPPALHRNNKRSHQSASQPLDSFFLPGSSPSFLGPRSIVRFDDASQVNGSSSSSSKPFFCSFELDENGDDDLDEYFRQPE KKRRLSVEQVQFLEKSFEVDNKLEPDRKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDTLQSSFDTLQADYAGLLKEKNHLKSEIDSLTEKLQQK ERAKAFSDMSQGQMEKPAQPCKQEDISSARSDIFDSESPHYTDGVHSSLLEAGDSSYVFEPDQSSDLSSQDEEDNLSRNLLPAAASYVLFPKLEDEDDYS DPSASFEDNAFWSSWPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10042180 [exp]	0	1
AT5G35840		PHYC	phytochrome C (.1)		Lus10006388 [exp]	14.7	0.7162
AT4G27250			NAD(P)-binding Rossmann-fold s...		Lus10021294 [exp]	15.2	0.7136
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10018636 [exp]	18.7	0.7031
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Lus10026447 [exp]	20.0	0.6538
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10010398 [exp]	22.3	0.7196
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10012258 [exp]	23.6	0.7499
AT1G75020		LPAT4	lysophosphatidyl acyltransfera...		Lus10018803 [exp]	28.0	0.6957
AT5G01750			Protein of unknown function (D...		Lus10014021 [exp]	32.3	0.6577
AT3G19553			Amino acid permease family pro...		Lus10009849 [exp]	36.2	0.6953
					Lus10029119 [exp]	38.3	0.6738

Compare expression of checked genes

Lus10042180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.