Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28470 556 / 0 Major facilitator superfamily protein (.1) AT1G69870 376 / 6e-123 NRT1.7 nitrate transporter 1.7 (.1) AT5G62680 364 / 4e-118 Major facilitator superfamily protein (.1) AT1G27080 358 / 2e-116 NRT1.6 nitrate transporter 1.6 (.1) AT1G18880 353 / 4e-114 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT3G47960 351 / 6e-113 Major facilitator superfamily protein (.1) AT1G52190 341 / 2e-109 Major facilitator superfamily protein (.1) AT3G16180 318 / 7e-101 Major facilitator superfamily protein (.1) AT1G68570 298 / 4e-93 Major facilitator superfamily protein (.1) AT3G54140 296 / 1e-92 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024345 [exp] 568 / 0 AT5G28470 634 / 0.0 Major facilitator superfamily protein (.1) Lus10015351 [exp] 398 / 2e-131 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10036705 [exp] 384 / 1e-125 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10037221 [exp] 382 / 9e-125 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036669 [exp] 376 / 1e-122 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1) Lus10033106 [exp] 368 / 1e-119 AT5G62680 761 / 0.0 Major facilitator superfamily protein (.1) Lus10041466 [exp] 326 / 3e-103 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1) Lus10035860 [exp] 317 / 7e-100 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10017817 [exp] 311 / 2e-97 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G091600 [exp] 563 / 0 AT5G28470 539 / 0.0 Major facilitator superfamily protein (.1) Potri.016G103200 [exp] 549 / 0 AT5G28470 534 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071500 [exp] 415 / 5e-138 AT5G62680 779 / 0.0 Major facilitator superfamily protein (.1) Potri.017G076800 [exp] 411 / 2e-136 AT3G47960 680 / 0.0 Major facilitator superfamily protein (.1) Potri.001G351200 [exp] 397 / 4e-131 AT5G62680 677 / 0.0 Major facilitator superfamily protein (.1) Potri.010G034700 [exp] 386 / 9e-127 AT1G69870 702 / 0.0 nitrate transporter 1.7 (.1) Potri.012G071400 [exp] 371 / 3e-121 AT5G62680 689 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 344 / 1e-110 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 333 / 2e-106 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040500 [exp] 332 / 5e-106 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10042182 pacid=23153715 polypeptide=Lus10042182 locus=Lus10042182.g ID=Lus10042182.BGIv1.0 annot-version=v1.0 ATGGCGGACCACGAAACTCACCCTCCCTCATCACCGCCGCTGCCGCCATCCTCCTCCGTCGACATGCCACCGCGGCAGCTTTCACCCATTCGTAAGGCGG CAGCTGGCGGCTGGAGAGCCATTAAGTTCATTCTAGCGAATGAGTCATTCGAGAAGTTGGCGTCGATGAGCTTGATAGCGAACCTGACGCTGTACCTGCA GAGCCAGTACAACATGGGAGGTGTTTTCAACGTCACTGTCACCACCGTCTGGGGTGGCACTTGCAACGTTGCTTCCTTGGCCGGAGCTTTCCTCGCCGAC GCTTATTTGGGCAGATTCCGTACCCTTCTCTACGGCAGCATTTCCTCCTTTCTGGGGATCGGAGCAATGACATTAATAGCAGCAATACCACAACTCAGGC CACCACAATGCCCCAAATTCTCCTCCCAATGCCAAGAGCCACAAGGATGGCAGCTAGCCTTCCTCTTCGGAGCACTCTCCCTCCTCGCCATCGGCGCCGG CGGGATCCGACCTTGTAACATAGCATTCGGTGCCGACCAATTCGACACCAGCACCGCCAAGGGACGGGCTCAGCTACAAGTCTTCTTCAACTGGTGGTAC TTCTGCTTCTCCGTCTCCTTAGCCATCGCACTCACCGCCGTCGTCTACATCCAGACCGAAATCAGCTGGCTAATCGGCTTCGCCATCCCCACCGCCTGCT TTGTCATCTCCATCTCCATCTTCCTCATGGGCCGCTCCACCTACATCCTCAAACCCCCTCACCGCGAGAACGCCTTCACTAATATGGCCCGAGTCGTCTA CGCTTCGTTCAAAAAACGGAAAGTACAGGTCCAGACCCGACCCGGATCCGTATACGACCCACCCCCAAATTCGAATTCGAAATTATGTCAAACAGAGAGG TTCAGGTTTCTGAACAGAGCATCCGTGGTGGTCGATCCTAGCGAGATCGACGAAGACGGGAAAGCTAGAAACCCGTGGAGGCTCTGCAGCGTACACCATG TGGAGGAATTGAAATGTCTAGCGGCGACTTTACCGGTCTGGGCGTCGGCAGTGTTCTGTTTCATTCCGACTGACCAGCTGACGTCGTTCGGGGTTTTACA GGCTATACAAATCGACAGATCGATCGGACGAAAATTCAACGTGCCACCGGGATGGGCGGGGCTGGTACCGATGGTGACGCTGTCGATCTGGATCTTGACG TACGAGAGGGTCCTGGTGCCGATGGGGAAGAGGATTACAGGGAAGAGCTGGAGGATGACGATCGCTAGCCGGATCAAGATCGGAATCCTGATGTCAGTCG TGGCCATGGTGGTAGCGGGGAGCGTGGAGAGGAAGCGGAGGGATTCTGCGGTGGCGGAGGGGGGATCGTTCGTGTCGCCGGTGAGCTTCGTCGTTTTGAT TCCGCAGTTCGTTGCGTCAGGGCTGTCGGAGGCGTTTGCGGCTGTGGCAGTGATGGAGTTATTCACGACGAGGATGCCGGAGAGTATGAGGACGGTGGCC GGAGCGTTGTTCTTTCTGTGTCTGGCAGGGACTGGATATGTGAGCTCGCTGTTGATTAATGTGATTAATAGAACGACTGGCAGGGGGGAGAAGACGGCGT GGCTGGGCGGGCATGATTTGAATAAGAACAGGCTGGATTATTACTACTATACCATTGCTGGAATAGCGTGCTTGAACTTCATCTACTTCCATTCCGTGGC CAGTCGGTTCGCGACGGAGAACGGTGGCCGGAATGGGGAGAAGGAGATTGAATTGGAGAGCTCAACTGGTGAAGTTAAGGAGAACAAAACTGGTGGGGCT CAAATTTCTGGAGATGCTTGCTAG
AA sequence Show only first row Show all	>Lus10042182 pacid=23153715 polypeptide=Lus10042182 locus=Lus10042182.g ID=Lus10042182.BGIv1.0 annot-version=v1.0 MADHETHPPSSPPLPPSSSVDMPPRQLSPIRKAAAGGWRAIKFILANESFEKLASMSLIANLTLYLQSQYNMGGVFNVTVTTVWGGTCNVASLAGAFLAD AYLGRFRTLLYGSISSFLGIGAMTLIAAIPQLRPPQCPKFSSQCQEPQGWQLAFLFGALSLLAIGAGGIRPCNIAFGADQFDTSTAKGRAQLQVFFNWWY FCFSVSLAIALTAVVYIQTEISWLIGFAIPTACFVISISIFLMGRSTYILKPPHRENAFTNMARVVYASFKKRKVQVQTRPGSVYDPPPNSNSKLCQTER FRFLNRASVVVDPSEIDEDGKARNPWRLCSVHHVEELKCLAATLPVWASAVFCFIPTDQLTSFGVLQAIQIDRSIGRKFNVPPGWAGLVPMVTLSIWILT YERVLVPMGKRITGKSWRMTIASRIKIGILMSVVAMVVAGSVERKRRDSAVAEGGSFVSPVSFVVLIPQFVASGLSEAFAAVAVMELFTTRMPESMRTVA GALFFLCLAGTGYVSSLLINVINRTTGRGEKTAWLGGHDLNKNRLDYYYYTIAGIACLNFIYFHSVASRFATENGGRNGEKEIELESSTGEVKENKTGGA QISGDAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28470			Major facilitator superfamily ...		Lus10042182 [exp]	0	1
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041831 [exp]	3.2	0.9191
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10000326 [exp]	3.5	0.9190
AT2G37470			Histone superfamily protein (....		Lus10023753 [exp]	4.6	0.9059
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10000474 [exp]	8.2	0.8464
					Lus10021752 [exp]	8.9	0.8786
					Lus10010270 [exp]	17.3	0.8892
AT3G21690			MATE efflux family protein (.1...		Lus10027169 [exp]	19.3	0.8646
AT4G05230			Ubiquitin-like superfamily pro...		Lus10007641 [exp]	20.1	0.8792
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10031235 [exp]	26.1	0.8792
AT1G75560			zinc knuckle (CCHC-type) famil...		Lus10035476 [exp]	29.0	0.8295

Compare expression of checked genes

Lus10042182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.