Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29150 425 / 2e-148 RPN6, ATS9 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) AT2G26990 74 / 3e-14 COP12, ATCSN2, FUS12 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) AT3G61140 47 / 2e-05 EMB78, CSN1, COP11, ATFUS6, FUS6, ATSK31 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008632 [exp] 456 / 1e-160 AT1G29150 721 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10036805 [exp] 455 / 3e-160 AT1G29150 718 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10037125 [exp] 454 / 1e-159 AT1G29150 721 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10029167 [exp] 84 / 2e-20 AT1G29150 77 / 1e-18 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10037417 [exp] 78 / 1e-15 AT2G26990 799 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) Lus10041295 [exp] 78 / 1e-15 AT2G26990 798 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) Lus10012998 [exp] 73 / 1e-15 ND 44 / 4e-06 Lus10041364 [exp] 43 / 0.0003 AT3G61140 708 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1) Lus10036566 [exp] 42 / 0.0004 AT3G61140 709 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G042400 [exp] 435 / 2e-152 AT1G29150 611 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.013G020300 [exp] 431 / 1e-150 AT1G29150 634 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.010G164200 [exp] 429 / 3e-150 AT1G29150 634 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.006G277900 [exp] 333 / 4e-112 AT1G29150 498 / 1e-175 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.001G222700 [exp] 85 / 4e-18 AT2G26990 772 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) Potri.009G020900 [exp] 84 / 1e-17 AT2G26990 815 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) Potri.002G154500 [exp] 43 / 0.0002 AT3G61140 681 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1) Potri.014G075500 [exp] 42 / 0.0005 AT3G61140 708 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10042184 pacid=23153728 polypeptide=Lus10042184 locus=Lus10042184.g ID=Lus10042184.BGIv1.0 annot-version=v1.0 ATGTCTTGTTCATACCTTCCAGCGACAACGGACACTATTGCTCAAGCGCTGGAAGCTAAGGTTCCATCTGAAGCCATTTCCATCCTCTACCGTGTACTTG AGAATCCTTCTTCCTCTCCTGAAGCCTTGCGCACAAAAGAACAGGCCATCACGAATCTTTCTGATCTGCTCAGACAAGAAAATAGGGCCGAGGACCTACG TAGCCTTTTGACTCAGCTGAGGCCATTCTTTGCCATGATTCCCAAGGCTAAAACTGCAAAAATTGTCAGAGGAATCATCGACTCTGTTGCCAAAATTCCT GGAACTTCTGATCTGCAAATTGCCCTCTGCAAAGAAATGGTGCTATGGACTCGTGCAGAAAAGAGGACATTTCTTAGGCAGCGAGTTGAAGCGCCGGCTC AGCAAGGGACGATTGATTTGCAAAGTGGGATTCTTCATGCCGAGGAGAAGGATTATAAGACGGCTTACAGCTACTTCTTCGAAGCGTTCGAGTCTTTCAA TGCTCTCGAGGACCCCAGGGCAGTTTTCAGTCTTAAATACATGTTATTGTGCAAGATCATGGTGAGCCAAGCTGATGATGTTGCTGGTATAATATCCTCT AAAGCTGGCCTCCAGTATGTGGGACCTGACTTGGATGCTATGAAAGCGGTCGCTGATGCTCACTCCAAGCGATCCTTGAAGTCATTTGAAACTGCACTGC GGGACTATAAGGCCCAGCTGGAAGAAGATCCCATTGTTCACCGACATCTCTCTTCTCTATATGACACTTTGTTGGAGCAAAATTTGTGTAGGCTGATTGA GCCTTTCTCCAGGGTTGAGATTGGACATATTGCCGAGCTGATTGAACTACCTATCGATCATGTGGAGAAGAAGCTCTCGCAGATGATTCTGGACAAGAAG TTTGCTGGAACGTTGGATCAAGGTGCTGGCTGTCTTGTCATCTTTGATGATCCCAAGACGGACGCCATATATCCGGATACACTAGAGACCATTGCCAACA TGGGAAAGGTGGTTGACAGTTTGTTTGCGAGGTCTGCCAAGATCATGGCATGA
AA sequence Show only first row Show all	>Lus10042184 pacid=23153728 polypeptide=Lus10042184 locus=Lus10042184.g ID=Lus10042184.BGIv1.0 annot-version=v1.0 MSCSYLPATTDTIAQALEAKVPSEAISILYRVLENPSSSPEALRTKEQAITNLSDLLRQENRAEDLRSLLTQLRPFFAMIPKAKTAKIVRGIIDSVAKIP GTSDLQIALCKEMVLWTRAEKRTFLRQRVEAPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISS KAGLQYVGPDLDAMKAVADAHSKRSLKSFETALRDYKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIGHIAELIELPIDHVEKKLSQMILDKK FAGTLDQGAGCLVIFDDPKTDAIYPDTLETIANMGKVVDSLFARSAKIMA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10042184 [exp]	0	1
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Lus10025050 [exp]	1.7	0.7810
AT5G26200			Mitochondrial substrate carrie...		Lus10026466 [exp]	3.5	0.7384
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10001213 [exp]	6.8	0.7691
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10030200 [exp]	9.8	0.7474
AT3G18240			Ribosomal protein S24/S35, mit...		Lus10022237 [exp]	10.2	0.7405
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10036783 [exp]	10.5	0.7235
AT2G20330			Transducin/WD40 repeat-like su...		Lus10022855 [exp]	12.0	0.7229
AT5G24840			tRNA (guanine-N-7) methyltrans...		Lus10020164 [exp]	16.1	0.7411
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10029934 [exp]	17.9	0.7247
AT3G16780			Ribosomal protein L19e family ...		Lus10023388 [exp]	18.1	0.7381

Compare expression of checked genes

Lus10042184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.