Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74740 777 / 0 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) AT1G18890 758 / 0 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1) AT3G51850 660 / 0 CPK13 calcium-dependent protein kinase 13 (.1) AT5G12480 639 / 0 CPK7 calmodulin-domain protein kinase 7 (.1.2) AT5G19450 636 / 0 CPK8, CDPK19 calcium-dependent protein kinase 19 (.1.2) AT3G57530 629 / 0 ATCPK32, CDPK32, CPK32 calcium-dependent protein kinase 32 (.1) AT2G41860 623 / 0 CPK14 calcium-dependent protein kinase 14 (.1.2) AT2G31500 559 / 0 CPK24 calcium-dependent protein kinase 24 (.1) AT5G12180 497 / 5e-174 CPK17 calcium-dependent protein kinase 17 (.1) AT5G04870 495 / 5e-172 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008631 [exp] 860 / 0 AT1G74740 886 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Lus10036667 [exp] 699 / 0 AT1G18890 804 / 0.0 calcium-dependent protein kinase 1 (.1) Lus10027361 [exp] 660 / 0 AT5G19450 909 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10004807 [exp] 648 / 0 AT3G51850 986 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10014907 [exp] 644 / 0 AT5G19450 896 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10027808 [exp] 643 / 0 AT3G51850 962 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10009947 [exp] 643 / 0 AT5G19450 889 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10002482 [exp] 642 / 0 AT3G51850 979 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10005038 [exp] 642 / 0 AT3G51850 793 / 0.0 calcium-dependent protein kinase 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G066200 [exp] 811 / 0 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.012G071700 [exp] 804 / 0 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.016G117200 [exp] 665 / 0 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.016G054600 [exp] 661 / 0 AT3G57530 864 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.001G257100 [exp] 656 / 0 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.006G052900 [exp] 655 / 0 AT3G57530 863 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.009G052700 [exp] 651 / 0 AT5G19450 903 / 0.0 calcium-dependent protein kinase 19 (.1.2) Potri.006G101300 [exp] 650 / 0 AT3G51850 977 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.007G127000 [exp] 569 / 0 AT2G31500 744 / 0.0 calcium-dependent protein kinase 24 (.1) Potri.010G244800 [exp] 503 / 1e-175 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10042185 pacid=23153962 polypeptide=Lus10042185 locus=Lus10042185.g ID=Lus10042185.BGIv1.0 annot-version=v1.0 ATGTCCAGCTTGCCTGAGCATTCAAACATAGTCAAGCTTAGGGCTACCTACGAGGATTTGGAGAATGTTCATTTGGTGATGGAGCTTTGTGAAGGCGGGG AGCTTTTTGACAGGATTGTGGCTAGAGGGCATTACAGTGAGCGAGCTGCTGCCACTGTTGCCAGGACGATCGCCGAAGTTGTTAGGATGTGCCATGATAA TGGTGTTATACATAGAGATTTAAAACCTGAGAACTTCCTTTTTGCTAATAAGAAGGAGAATTCTGTTCTTAAGGCCATCGATTTCGGGTTGTCCGTGTTC TTCAAGCCCGGGGAGAAGTTTACTGAGATAGTAGGGAGTCCATATTACATGGCGCCAGAGGTGTTGAAGAGGAATTATGGGCAAGAGGTTGATGTGTGGA GTGCTGGAGTTATACTTTACATTCTGCTATGTGGGGTTCCTCCATTTTGGGCAGAGACGGAGCAGGGTGTTGCCCTATCGATTTTGAGGGGAGTGCTTGA TTTCAAGAGGGAGCCATGGCCACAGATTTCAGAAAGTGCCAAGGGTCTTGTTCGGCAGATGTTGGAACCAGATCCTTCCAAGCGCTTAACTGCTCAGCAA GTCCTAGATCATCCTTGGATTCAAAATGCAAAGAAAGCTCCAAATGTCCCGTTGGGAGATATTGTGAGGACGAGACTCAAGCAGTTCTCCGTGATGAACA AATTCAAGAAGAAGGCTCTCCGGGTAATTGCTGAACACTTGTCACATGAAGAAGTTGAGGTCATAAGAGATATGTTCACCCTGATGGATACCGACGGTGA TGGTAAAGTCTCGTATGAGGAACTAAGGGCTGGCCTTCGGAAGGTTGGTTCGCAGTTGGCTGAGCCAGAGATCAAGATGCTTATGGAAGTGGCTGATGTT GATGGGAATGGTATACTGGACTATGGAGAGTTTGTAGCAGTTACAATTCACTTGCAGAAGATGGAGAACGATGACCATTGCCGCAGGGCATTTGTGTATT TCGACAAAAACGGCAGCAGCTATATCGAACTAGACGAATTACGAGACGCCTTGGCAGATGAAAATGGTGAAACTGATGATGACGTGCTCAACGAGATCAT GCGGGAAGTCGACACTGACAAGGATGGACGAATTAGCTATGATGAATTCGTGACGATGATGAAAGCTGGAACCGACTGGAGAAAGGCATCGAGGCAGTAC TCGAGGGAAAGATTCAAGAGCCTGAGCGTCAACCTGATGAAAAATGGGTCCCTCCAGCTCCATGACGCGCTCACTGGTCAAGCCATCGCCGTGTAG
AA sequence Show only first row Show all	>Lus10042185 pacid=23153962 polypeptide=Lus10042185 locus=Lus10042185.g ID=Lus10042185.BGIv1.0 annot-version=v1.0 MSSLPEHSNIVKLRATYEDLENVHLVMELCEGGELFDRIVARGHYSERAAATVARTIAEVVRMCHDNGVIHRDLKPENFLFANKKENSVLKAIDFGLSVF FKPGEKFTEIVGSPYYMAPEVLKRNYGQEVDVWSAGVILYILLCGVPPFWAETEQGVALSILRGVLDFKREPWPQISESAKGLVRQMLEPDPSKRLTAQQ VLDHPWIQNAKKAPNVPLGDIVRTRLKQFSVMNKFKKKALRVIAEHLSHEEVEVIRDMFTLMDTDGDGKVSYEELRAGLRKVGSQLAEPEIKMLMEVADV DGNGILDYGEFVAVTIHLQKMENDDHCRRAFVYFDKNGSSYIELDELRDALADENGETDDDVLNEIMREVDTDKDGRISYDEFVTMMKAGTDWRKASRQY SRERFKSLSVNLMKNGSLQLHDALTGQAIAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10042185 [exp]	0	1
AT3G26720			Glycosyl hydrolase family 38 p...		Lus10012578 [exp]	1.7	0.9042
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10028426 [exp]	2.6	0.9168
AT1G11050			Protein kinase superfamily pro...		Lus10012701 [exp]	5.7	0.8634
AT5G08335		ATICMTB, ATSTE1...	ARABIDOPSIS THALIANA ISOPRENYL...		Lus10030398 [exp]	6.3	0.8716
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Lus10027436 [exp]	6.3	0.8797
AT4G36190			Serine carboxypeptidase S28 fa...		Lus10041817 [exp]	7.1	0.8631
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10015740 [exp]	7.9	0.9088
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10005067 [exp]	9.9	0.8438
					Lus10034772 [exp]	14.1	0.8757
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Lus10015464 [exp]	14.8	0.8217

Compare expression of checked genes

Lus10042185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.