Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47890 1555 / 0 Ubiquitin carboxyl-terminal hydrolase-related protein (.1) AT3G47910 1539 / 0 Ubiquitin carboxyl-terminal hydrolase-related protein (.1.2) AT1G65120 143 / 5e-34 Ubiquitin carboxyl-terminal hydrolase-related protein (.1.2) AT2G27630 139 / 5e-33 Ubiquitin carboxyl-terminal hydrolase-related protein (.1) AT1G65130 137 / 3e-32 Ubiquitin carboxyl-terminal hydrolase-related protein (.1) AT1G65160 128 / 4e-32 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G65200 134 / 3e-31 Ubiquitin carboxyl-terminal hydrolase-related protein (.1) AT5G51530 131 / 3e-30 Ubiquitin carboxyl-terminal hydrolase-related protein (.1) AT2G27650 130 / 5e-30 Ubiquitin carboxyl-terminal hydrolase-related protein (.1) AT1G65110 126 / 7e-29 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008630 [exp] 2552 / 0 AT3G47890 1408 / 0.0 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G071900 [exp] 1805 / 0 AT3G47890 1631 / 0.0 Ubiquitin carboxyl-terminal hydrolase-related protein (.1) Potri.015G066500 [exp] 1799 / 0 AT3G47890 1634 / 0.0 Ubiquitin carboxyl-terminal hydrolase-related protein (.1) Potri.017G089250 [exp] 331 / 8e-92 AT3G47890 317 / 2e-87 Ubiquitin carboxyl-terminal hydrolase-related protein (.1) Potri.018G107500 [exp] 53 / 2e-06 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.006G185200 [exp] 52 / 6e-06 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04780 [flax] [poplar] DUF629 Protein of unknown function (DUF629) CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase CL0125 [flax] [poplar] PF04781 [flax] [poplar] DUF627 Protein of unknown function (DUF627)
Representative CDS sequence Show only first row Show all	>Lus10042186 pacid=23153913 polypeptide=Lus10042186 locus=Lus10042186.g ID=Lus10042186.BGIv1.0 annot-version=v1.0 ATGGGGCATAAGAAGCGCGCAGTCGCTCCACGCTCCAAGCACCAGTCGCCGCACTCTGCTGCTTCAGCGGCGGTGGGAGATGAAGCCGAGCTTTGTCCCG ATCCCAACAACAATCTGTCGATTGTGAAGATCGAACCGGAACTCGACTGCCCCGGCTCTTCGTCTTACGCCGCAGTCAAGCTGGAATGCGAGCGAGCCCT AACAGCGCTCCGGCGAGGGAACCACACCAAGGCGCTGCGGCTCATGAAGGAGTCGTGTTCTCGCTACGGTGACTATTCCCCTCATTCCGCTTTGATTTAT CGTGTCCAAGGGACGGTTTGTGTGAAGGTGGCATCGATAATCGATGATCCCAACGCCAAACAGCGGCACCTGAGGAACGCCGTGGATTCGGCGCGTAAGG CTGTGGAGCTGTCGCAAAACTCGATTGAGTTCTCCCATTTCTATGCTAATTTGCTCTACGAGGTTGCTAATGACGGGAAGGAGTATGATGAGGTGATGAA GGAGTGTGATAGGGCTTTGGAAATACTGAATCCAGTTGATCCTGCTAAGGAGAGTTTGCAGGAAGAGAATCAGCAGAAGATTGCCACGGCTGAGGCTAGG ATTGCTCATGTTCAGGGTGAGTTGAGGAGCTTGAAGCAGAAATCGAGTATTGCTTCCATTTCTACATGGATGAAGAATCTAGGGACGGGAGAGGAGATTA GGTTGATTCCGATTCGACGTGCCACTGAAGACCCCATGGAGGCTAGGTTGTCACAGACGAGGCGGCCTAACGAAATTAAGAAAGCTACCAAGACTCCAGA GGAGCGAAGGAAAGAGATTGAGGTCAGAGTTGCTGCTGCCAGACTCTTGCAGCAGAAATCGGATACTGATTTGGGACGCAATGATGGGGAGAGGAATAAT AATGACAAGGGAGTTGAGTTGTCCTCTGGAAATGAAAAGAGAGGAGATAGGAGAAAGTATGGGAGCAATGCAAAGAGGACAGGTACTAATACGGAAAGGA AGGACTGGGTGCGATCATATTGGAACTCAATGAAGACAGAAATGAAAAAGGAGTTGCTCAAAATTAGGGTCAGCGATTTGAAGGGCTATTTTGGCTTGTC AAAGGATGGATTGGCGAGCGAGGTCCTCAACGAGGCACTGACATTTGAAGAGGGGGAAACCGGATGGAGATTTTGGGTTTGTTGCAGATGCTCTGAGAAG TTCCCTACTCCGGAGAAACATATACAGCATGTTGTGCAAGAGCACATGGGTAATCTTGATCCCAAAATGCAAGCAGTCTTGCCTCAAAATGTTGAAAGTA GTTGGATTGAGATGATCATGAATTATTCTTGGAAACCATTGGATGTTTCTTCTGCAGCTAAGATGCTCGGGCATCAACGGAAATTCCAGGATCCAGAGCC TGTCAACGACTGTTCCCTTGAAAATCATGACGGCGATTGTGAGGATTACAAGGATGCGTGTGATTCTTCTCCAGAGAAGGAAAACGTAGGAGATGGATTC AGCGAAAGCAGTAATGGAGGTAAGGATACTGATGGAGGAGCAGATTCTGAGTGTAGAGAATGCAATGGCAAAGAAGAATCTCTGGCATATTCTATTGAAA GCTGGCCATTATCAGATGACTCTGAGAGAGGAAAGCTTCTTGAGAGAATTCATGATGTATTTGAATCTCTTATTAGTCATAAGTATCTTGCGACAAGCCA TATTACCAAGGTGCTACAAATTAGTAAGGACGAATTACGGACTCTTGCTTCTGGTTCTCAGCTTCTGAACCATGGTTTGGACGAAACACCTTTCTTGATT TGCTTTTTGGAAGCACCCCAACTGAGAAGGATCCTCAAGTTCCTGCAGGATCTAGCTCATGCTTGCGGTTTGAGCAGATATTCAGAAAAAGGGAATGCAT TGGTTAATAGAAATAATGGTGTTCATGTATCTGAGTACAAAGAAGATCTTGTTCTTAATGGTGACAGATCATATCTCTACTTGGACGAGAGGCTATTGGC ATCTGAATGTGCTCGTGAGAATGATACCAGTCTATGTTGGGGTAATCCTGGAAAAGGGGTTCCATCTGACACCGATTCATTATTATCATGGATATTTTCA GGTCCCTCTAGCAATGATCAGTTGCAGTTATGGATGCGAACAAATGAAGAGAAAATGCAACAAGGAATGGACATTGTCCAGAATCTTGAGAAGGAGTTTT ACCACTTGCAAAGTCTTTGTGAGAGAAAATGTGAGCATCTAAGTTATGAGGAAGCTTTGCAGACTGTGGAGACTTTTTGTCGTGAAGAAGTTAAGAACAG AGATGATATGACTCTGTCTGAATTAGAAAGCTGTGATTCTATTCTTAGAAGGAGGAGGGACGAGCTCGCAAATTGTGTGAATGATGATGTTATGTTAAGT GGTAGAAGTTCTGAATTAGATGTTATATCAAGTGTCCTAAAAGAGGCAGAAACTCTGAATGTTAATCATTTTGGATATGAAGATAATTATGGTGCTATGG CTTCTCAGTTATGCGACTTGGAATCTGGTGAAAATAGTGATGGCAGAGGCAACGATTATATCCATCAAATGGATTCTTTCATTGAAGTTGCTATCGAGAA GCAGAAAGATCAGCTATCTGTTGAGCTAAGCAAAATAGATGTCAGGATCATGAGAATTGTGTCAGGGATGCAGCATTTAGAACTCAAACTCGAGCCTGTT TCTGCACGTGACTATCAGTCGATATTGCTGCCTTTAGTGAAGTCTTACTTGAGGGCTCATTTGGAGGATCTAGCTGAGAAGGATGCCACAGAAAAATCTG ATGCAGCCAGAGAAGCATTTTTAGCGGAGCTTGCACTAGATTCTAAAAAGGCTTCCCACGGAGGTAGTGATCCTTCAAGAAACTCGCAAGAGAAAAAGGA CAAGAAAAGGAATAAAGAGTTAAAGAAGACAAAGGACTATAAGGGTGGTTCTGGCAATGAGCAGCCACTGCTTCATGATGAAACAACTGAACTTGAAACC TTTGCACTCTCATCGGAGCGCGATCTAGAAGCTGAGATTCTTCCCTCTTCAAATGGTGTGAACATGAGAGAGCAGGAGGAAGAATTTCGTCGCAAAATTG AGCTCGAGGAGGAGGAAAGAAAGCTGGAAGAGACTCTAGAGTTCCAAAGGAGAATTGAGAATGAGGCCAAACTGAAGCACTTGGCTGAGCAACAGCATAA GCGAGCGTATAAGACATTTCCAGATAACTTTACTGAGGGACAACAGGATGCATCGTTGGAGCAAGCAGCTAATAAGGAGAATGATTCCTCAATAATGGGA CCATTAGCAAAGACAAATGGGTTATCCAGCAAATTTGGAGCTGGACGATCGACTACTGGAAATGCTTCTGAGTTGCCGAGTGAATCTTTTCGTTTGCCTG GTTCTGAAGCTCTTGATAAACTTAACCAAGGTCTTCCTAATGGAGTTACCATGGAGAATGGCATACTATCTTCTGACAGAAGGACGGGAAGGAGAGCTAG GCGGCAGAAAAGTTCTTCCAGATCTGCTGATAGTAATTGCCAACTTATATCAGCTGAAAAAGAAAATACTGTAGCTGTGACTGTTAATCCTGGGTCTGAA GATACGGGGTCCAAGACATTGAGACAATTGCGAGTAGAGGAAGATGACGAGGAACGATTCCAGGAAGATCTGAAAAAGGCTGTACGGCAAAGTCTGGATA CATTCCAAGGTCATGAGAGCATCCCATCCATTCCCCGCTTGAGAATGCCACCTAAGACTACTTTGGAGACAAAGTGTTTAGGGAGCTCCCAACATGAGGT TACAGTCGAACATGAAAATGGAACTGATGTGTTTGGTAGTGGTCTTAAGAATGAAGTCGGTGAATACAATTGCTTTCTGAACGTAATTATACAGTCCTTA TGGCATTTAAGGCGGTTTCGAAGCGAGTTCATGAAAAGATCAACATCGGAGCATGTTCATGTCGGAGACCCATGTGTTGTTTGTGCATTATATGATATTT TTTCCGCTCTAAGCCTTGCGTCCATTGATGTCCAAAGAGAGGCTGTTGCTCCTACCTCTCTGAGGCTTGCTCTGAGCAACCTTTATCCAGATAGTAATTT CTTCCAGGAGGGTCAAATGAATGATGCATCTGAAGTGCTTGTTGTTATATTCGATTGCCTTCATCAAGCATTTACTTCTGGATCAACAGTCTCTGATTCA GATTCAGTAGGAAGTAGTTCCATGGGGGCTTGGGATTGCACCAACAACAACTGTTTAGTCCACTCCATATTTGGCATGGACATATTTGAACGGATGAACT GCTACAGCTGTGGTTTGGAGTCCAGACATCTGAAGTATACATCTTTCTTCCATAACATAAATGCAAGCGCTCTTAGAACTATGAAAGTGATGTGTACTGA AAGCTCCTTTGATGAGCTTCTGAATCTCGTAGAGATGAATCATCAATTAACTTGTGACGATGAAGTTGGCGGTTGCGGGAAACCCAACTACATTCATCAT ATCCTGTCGACTCCACCACATGTTTTTACAGCAGTCTTGGGATGGCAAAATACATCTGAAAGTGCTAATGATATTGCAGCAACTTTGGCATCTTTAAGCA CGCAGATCGATGTTAGTGTCCTCTACCGCGGTTTGGATCCGAAAAACTTGCATGGCTTGGTTTCAGTGGTGTGCTATTATGGGCAACATTATCATTGCTT TGCATACAGTCACGATCGTGAACAGTGGATCATGTATGACGACAACACTGTCAAGGTAATCGGCGACTGGGCAGACGTTCTTATCATGTGCAAGAAAGGG CATTTACAACCTCAGGTTCTTTTCTATGAAGCTGTAAACTAG
AA sequence Show only first row Show all	>Lus10042186 pacid=23153913 polypeptide=Lus10042186 locus=Lus10042186.g ID=Lus10042186.BGIv1.0 annot-version=v1.0 MGHKKRAVAPRSKHQSPHSAASAAVGDEAELCPDPNNNLSIVKIEPELDCPGSSSYAAVKLECERALTALRRGNHTKALRLMKESCSRYGDYSPHSALIY RVQGTVCVKVASIIDDPNAKQRHLRNAVDSARKAVELSQNSIEFSHFYANLLYEVANDGKEYDEVMKECDRALEILNPVDPAKESLQEENQQKIATAEAR IAHVQGELRSLKQKSSIASISTWMKNLGTGEEIRLIPIRRATEDPMEARLSQTRRPNEIKKATKTPEERRKEIEVRVAAARLLQQKSDTDLGRNDGERNN NDKGVELSSGNEKRGDRRKYGSNAKRTGTNTERKDWVRSYWNSMKTEMKKELLKIRVSDLKGYFGLSKDGLASEVLNEALTFEEGETGWRFWVCCRCSEK FPTPEKHIQHVVQEHMGNLDPKMQAVLPQNVESSWIEMIMNYSWKPLDVSSAAKMLGHQRKFQDPEPVNDCSLENHDGDCEDYKDACDSSPEKENVGDGF SESSNGGKDTDGGADSECRECNGKEESLAYSIESWPLSDDSERGKLLERIHDVFESLISHKYLATSHITKVLQISKDELRTLASGSQLLNHGLDETPFLI CFLEAPQLRRILKFLQDLAHACGLSRYSEKGNALVNRNNGVHVSEYKEDLVLNGDRSYLYLDERLLASECARENDTSLCWGNPGKGVPSDTDSLLSWIFS GPSSNDQLQLWMRTNEEKMQQGMDIVQNLEKEFYHLQSLCERKCEHLSYEEALQTVETFCREEVKNRDDMTLSELESCDSILRRRRDELANCVNDDVMLS GRSSELDVISSVLKEAETLNVNHFGYEDNYGAMASQLCDLESGENSDGRGNDYIHQMDSFIEVAIEKQKDQLSVELSKIDVRIMRIVSGMQHLELKLEPV SARDYQSILLPLVKSYLRAHLEDLAEKDATEKSDAAREAFLAELALDSKKASHGGSDPSRNSQEKKDKKRNKELKKTKDYKGGSGNEQPLLHDETTELET FALSSERDLEAEILPSSNGVNMREQEEEFRRKIELEEEERKLEETLEFQRRIENEAKLKHLAEQQHKRAYKTFPDNFTEGQQDASLEQAANKENDSSIMG PLAKTNGLSSKFGAGRSTTGNASELPSESFRLPGSEALDKLNQGLPNGVTMENGILSSDRRTGRRARRQKSSSRSADSNCQLISAEKENTVAVTVNPGSE DTGSKTLRQLRVEEDDEERFQEDLKKAVRQSLDTFQGHESIPSIPRLRMPPKTTLETKCLGSSQHEVTVEHENGTDVFGSGLKNEVGEYNCFLNVIIQSL WHLRRFRSEFMKRSTSEHVHVGDPCVVCALYDIFSALSLASIDVQREAVAPTSLRLALSNLYPDSNFFQEGQMNDASEVLVVIFDCLHQAFTSGSTVSDS DSVGSSSMGAWDCTNNNCLVHSIFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCTESSFDELLNLVEMNHQLTCDDEVGGCGKPNYIHH ILSTPPHVFTAVLGWQNTSESANDIAATLASLSTQIDVSVLYRGLDPKNLHGLVSVVCYYGQHYHCFAYSHDREQWIMYDDNTVKVIGDWADVLIMCKKG HLQPQVLFYEAVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47890			Ubiquitin carboxyl-terminal hy...		Lus10042186 [exp]	0	1
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10029909 [exp]	2.8	0.8993
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Lus10038353 [exp]	4.2	0.9148
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Lus10036217 [exp]	6.2	0.9147
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10037962 [exp]	10.4	0.9107
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10043474 [exp]	11.0	0.9112
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023394 [exp]	11.5	0.9020
AT5G11040		AtTRS120	TRS120 (.1)		Lus10013164 [exp]	13.0	0.8999
AT2G27900			unknown protein		Lus10000865 [exp]	13.2	0.8742
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021680 [exp]	14.5	0.9049
AT4G21700			Protein of unknown function (D...		Lus10006025 [exp]	15.6	0.8947

Compare expression of checked genes

Lus10042186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.