Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47870 46 / 7e-06 AS2 ASL29, SCP, LBD27 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008629 [exp] 287 / 4e-98 AT3G47870 175 / 2e-52 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10033111 [exp] 152 / 5e-45 AT3G47870 194 / 5e-60 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10036665 [exp] 145 / 2e-42 AT3G47870 182 / 2e-55 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G072000 [exp] 124 / 7e-35 AT3G47870 180 / 7e-55 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Potri.015G066700 [exp] 120 / 2e-33 AT3G47870 191 / 2e-59 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042187 pacid=23153764 polypeptide=Lus10042187 locus=Lus10042187.g ID=Lus10042187.BGIv1.0 annot-version=v1.0 ATGTACCGCCAGCAACACCACCACCCTTTCTCCACCGCCGATGTCGGCGACAATGTCGATATGGTGCCGTCGCAGTTGGAGCTCGGTATGGCGCCTCCTG CGGGCGCCGGTAATGCTCTCGCTCTCTTCAGTCATGATCCTGATCCTCCGCCTTTTTGCACCGCCGGAGTGGTGGCGGCGGCGGCGGCTCTGCCTCCTTC GCCTGTTACACCAGATCAGCAGCATTCCTTCTCTATGAGCAGTAATAACGTAGGAGGATTAGTAGGAGGGTACAATAATGTGGGTTACTTGGAATCCAAG GAACCTGTAGGAAATTCCTTTTGGCTGCAGCATAATACCACCTATGGTATGAACAACAATAACAATAGCAATATTCCATCAACCATGGCTCTTCAATCCC AGTTGTTAGGACAGCAGGAAGTTGTGCAGGACTATGACGAGATTCATCCGTTTTTCGACACAATCGATGACAGGCAATCCTACATTGATTCTAAAGAGGC TTATGATACAAGCTCGGAAGAGTCGCTCAAGGACACTACACAGTCTCTTGAACACGTAGCGGAGAACGAGCTGAAGAGTGCTGCAGCATGCTTCAGCCTG ACCAGTGTCAACTGA
AA sequence Show only first row Show all	>Lus10042187 pacid=23153764 polypeptide=Lus10042187 locus=Lus10042187.g ID=Lus10042187.BGIv1.0 annot-version=v1.0 MYRQQHHHPFSTADVGDNVDMVPSQLELGMAPPAGAGNALALFSHDPDPPPFCTAGVVAAAAALPPSPVTPDQQHSFSMSSNNVGGLVGGYNNVGYLESK EPVGNSFWLQHNTTYGMNNNNNSNIPSTMALQSQLLGQQEVVQDYDEIHPFFDTIDDRQSYIDSKEAYDTSSEESLKDTTQSLEHVAENELKSAAACFSL TSVN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47870	AS2	ASL29, SCP, LBD...	SIDECAR POLLEN, ASYMMETRIC LEA...		Lus10042187 [exp]	0	1
AT1G48590			Calcium-dependent lipid-bindin...		Lus10042002 [exp]	41.7	0.7790
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10028361 [exp]	61.4	0.7739
AT3G19895			RING/U-box superfamily protein...		Lus10000199 [exp]	118.6	0.7420
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10026058 [exp]	144.4	0.7531
AT4G27270			Quinone reductase family prote...		Lus10007612 [exp]	150.5	0.7492
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10035890 [exp]	154.6	0.7244
AT5G14540			Protein of unknown function (D...		Lus10014549 [exp]	272.1	0.7123

Compare expression of checked genes

Lus10042187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.