Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74770 247 / 3e-76 zinc ion binding (.1) AT1G18910 239 / 2e-73 zinc ion binding;zinc ion binding (.1) AT3G18290 207 / 2e-62 BTS, EMB2454 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) AT5G22920 114 / 2e-31 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT3G62970 114 / 4e-31 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G25560 105 / 1e-27 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) AT5G18650 100 / 4e-26 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT2G40830 44 / 3e-05 RHC1A RING-H2 finger C1A (.1.2.3) AT3G56580 42 / 6e-05 RING/U-box superfamily protein (.1.2.3) AT3G10815 40 / 0.0003 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008628 [exp] 303 / 3e-96 AT1G74770 1024 / 0.0 zinc ion binding (.1) Lus10005111 [exp] 211 / 2e-63 AT3G18290 1592 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10034346 [exp] 210 / 4e-63 AT3G18290 1467 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10042190 [exp] 177 / 1e-52 AT1G18910 563 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10023914 [exp] 107 / 4e-28 AT5G22920 225 / 8e-72 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10012811 [exp] 103 / 4e-27 AT5G18650 465 / 1e-167 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10033969 [exp] 100 / 3e-26 AT5G18650 449 / 2e-161 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10036664 [exp] 85 / 3e-22 AT3G18290 81 / 5e-20 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10033112 [exp] 83 / 3e-20 AT1G18910 75 / 6e-16 zinc ion binding;zinc ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G066600 [exp] 237 / 1e-72 AT1G74770 1199 / 0.0 zinc ion binding (.1) Potri.008G123300 [exp] 216 / 4e-65 AT3G18290 1604 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.010G122200 [exp] 215 / 6e-65 AT3G18290 1578 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.012G055100 [exp] 208 / 1e-62 AT3G18290 1641 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.014G134400 [exp] 109 / 2e-29 AT3G62970 393 / 3e-139 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G205400 [exp] 106 / 2e-28 AT5G18650 466 / 2e-168 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.009G005700 [exp] 106 / 3e-28 AT5G22920 437 / 8e-156 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.006G245400 [exp] 103 / 5e-27 AT5G25560 475 / 7e-171 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) Potri.006G121801 [exp] 99 / 2e-25 AT5G22920 398 / 6e-141 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.013G088400 [exp] 42 / 0.0001 AT3G16090 613 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042188 pacid=23153987 polypeptide=Lus10042188 locus=Lus10042188.g ID=Lus10042188.BGIv1.0 annot-version=v1.0 ATGGTGGAAGAAGACGAGTGTTTTGGAAAGGAAGAAGGTGAAACAATCTTGTTTATACATGCCTACGTTGCCATGATGAGTCAGCTGATCACACAGCAGA CAGGAAAGGGTTTAGGGATTGACTACTTCCATTGCATGAAATGCAATGCCTGCATGTCCAAGTCTTTGTCCAAGCATACATGCAGAGAGAAATGCTTCGA CGATAACTGCCCCATTTGCCGGGAATCCATCTTCACGTCCAGCATACCAGTGAAAGCTCTCCCTTGTGGTCATCTGATGCACTCCCCATGTTTTCAGGAG TACACATGCAATCATTATATCTGCCCGATATGTAGCAAGTCACTTGGCGACATGAAGGTGTACTTTAAGATGCTGGATGCCCTTTTGGCTGAAGAGAGAA CTCCAGATGAATACGCAAGCCAAACTCAGGCCATCCTTTGCAATGATTGTGAGGAGAAAGGATCTGCACGTTTCCACTGGTTTTATCACAAATGTTCGTA TTGTGGGTCATACAACACAAGACGTATATAA
AA sequence Show only first row Show all	>Lus10042188 pacid=23153987 polypeptide=Lus10042188 locus=Lus10042188.g ID=Lus10042188.BGIv1.0 annot-version=v1.0 MVEEDECFGKEEGETILFIHAYVAMMSQLITQQTGKGLGIDYFHCMKCNACMSKSLSKHTCREKCFDDNCPICRESIFTSSIPVKALPCGHLMHSPCFQE YTCNHYICPICSKSLGDMKVYFKMLDALLAEERTPDEYASQTQAILCNDCEEKGSARFHWFYHKCSYCGSYNTRRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74770			zinc ion binding (.1)		Lus10042188 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10014922 [exp]	4.0	0.9073
AT4G39230			NmrA-like negative transcripti...		Lus10042311 [exp]	9.1	0.9213
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10040335 [exp]	14.5	0.8747
AT1G27180			disease resistance protein (TI...		Lus10017143 [exp]	15.0	0.8806
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10004382 [exp]	23.8	0.8806
AT3G57550		GK-2, AGK2	GUANYLATE KINAS 2, guanylate k...		Lus10011328 [exp]	25.0	0.8571
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028715 [exp]	25.1	0.8567
AT5G45230			Disease resistance protein (TI...		Lus10012247 [exp]	26.5	0.8855
AT4G10030			alpha/beta-Hydrolases superfam...		Lus10006176 [exp]	27.2	0.8001
AT3G55740		ATPROT2, ProT2	proline transporter 2 (.1.2)		Lus10028251 [exp]	38.1	0.8090

Compare expression of checked genes

Lus10042188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.