Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74770 568 / 0 zinc ion binding (.1) AT1G18910 564 / 0 zinc ion binding;zinc ion binding (.1) AT3G18290 292 / 3e-82 BTS, EMB2454 embryo defective 2454, BRUTUS, zinc finger protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008628 [exp] 1792 / 0 AT1G74770 1024 / 0.0 zinc ion binding (.1) Lus10042190 [exp] 470 / 1e-153 AT1G18910 563 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10005111 [exp] 331 / 5e-96 AT3G18290 1592 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10034346 [exp] 283 / 3e-79 AT3G18290 1467 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10033112 [exp] 72 / 3e-14 AT1G18910 75 / 6e-16 zinc ion binding;zinc ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G066600 [exp] 806 / 0 AT1G74770 1199 / 0.0 zinc ion binding (.1) Potri.010G122200 [exp] 333 / 2e-96 AT3G18290 1578 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.008G123300 [exp] 324 / 2e-93 AT3G18290 1604 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.012G055100 [exp] 182 / 2e-46 AT3G18290 1641 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01814 [flax] [poplar] Hemerythrin Hemerythrin HHE cation binding domain
Representative CDS sequence Show only first row Show all	>Lus10042189 pacid=23153672 polypeptide=Lus10042189 locus=Lus10042189.g ID=Lus10042189.BGIv1.0 annot-version=v1.0 ATGGACGGCTCCGGCGGCGGCGACGACGACGTCGTCGATGACGGCTCGATAAACTCTCCGATTGAAGACCACGGAAACGAGGAAAATCGAGCAGAAGAAG GCGACGAAGATGAAGTGAATTACGAGACGGAGTTCGAGGTCGAAGGGGAGCTGTTCTCCGGTTTGCGTTTGGCTGATGCTCCTATACTGTTCATCCTCTG TTTCCATAGGGCGTTCCGTCGGGAACTGGCGGAGCTGTGTCGGATTTCTCTTGTGGCTTCCGAGAGTGGAGGAGGAGGAAGCGCGATTGATGAGCTTCGC TGCGGATTCGAGTTCCTTAAACTTGCTTATGACTATCACTCTGCCGCTGAAGACGAGGTTATCTTTCTAGCATTAGACGTCCACGTTAAGAATATTGTCT GTGCATATTCACTAGAGCACAAAAGCATAGATGATGCATTTGCCACGGTTTCCCGTTGCTTGAAAGTGTTGATGGAGGAAAAACCAGAAACTAGTTTTGA GCCATTTCAAGAACTTGTATCTTGCCTCAGCATTATCCATTCCTCCATATGCCACCATATGCTAAAAGAAGAAAAACAGGGCCTAAAAGATCTATGCTGT GCAGAAAAATTCTGTCAATATAAGGTTACTTCTAACCGTGATAACACGGTATGGATGTGTGCCGGACTGAGGCTGCAGGTTTTTCCTTTACTCGTGGAAC GGTTCTCTCCGAAAGAACAAGCTTCGCTTGTGTGGCAATTCCTTTGCAGCATACCTGTAATTTTGTTGGAGGATTTCCTGCCATGGATGATCTCTCTTTC TCCTGAAAACCAAGTTGATGTTACAATTTGCATTAAAGAAATTGTACCTGATGGACCACTCCAAGAGGTTGTAATTTCTTGGCTCTGGAGACATGCTCAA TTCCCATCTAGGGATTTGATAAACACAGCTGGACGGGGACATATGCCACACATGATCTTTTCTGCTAGGTGTTCTGAAGAAAATTGGCAATCGAGGACAA CAGATTCTGTCCTTGCCAAAAAGGGGCACGTTGTTCATGACTGTTTCCATCTCTGGCATGGTGTGATTATAAAATCATTATGGGAAGTTCTTGAAGAATC ATACCAAATAAGATCAGGAAGTTTGTTAAATGTAGATCCAACCTTAGTGAGGCTGAAGTTTCTTGCTGATGTAGTTACCTTCTACAGCAATGCATTGAAG AAATTCTTTGATCAGATGTTAAATAGACTGGCCAGTGACCACTTCACTGGTTTATATGCTGACCAGTCCCCGGCTGAAAGTCACTTGGAGAGTATACAGA AGTTGCTCCATGACAATGCTCAGAATATTTTACCTGTGCATGAGGTTGTGGAAAAGCTCTGCGAGGGAATGGAGCCCTTTGTCATGGAAGTCGGAAAACA ATTCAAATTTCTAGAAGCAAAGGTATTTCCCCTTTTAATCGATAACTGTGGCCAAGAAATGCAGCCAGCGCTCTTTTTGTACATGAGCTTTGGTATGATG CCTCTAGGCTTACTGAAGTTTGTAATCACTTGGTTCGCAGCCTGCTTGTCCAAACATGAGTTGGGGCTCATCCTTCAAGGGTTGAAACAAGATGAAAGTT TGGCCAGTAAATCTTTTCTGTCCCTCTTGCATGAGTGGTTACTCATTGGTTATTCTGGAAAAATCTCTGTCGATGATTTTGGAAAGGATTTGCAGAGAAT GTTTGAGACTAAATCTTCATTCCTGATTGAAAGATCCAAGGAGGATGTTAAATTCTCTTCCTTACCCTTGAACTTGAAACCTTATGAAGCATCTCCCCAT TTTAAAGCAGAACCAGTTCCCCTTTGTGAGAACAAACTCCTTTCTCCATCTTCTTTGTCCTTTGGTTTTGACAAAGCTAAGAGTTACCAGACATCTTATT CTGGAGAAATAAACCTACATGTGCTTTTTCCTCAAACGATAAAGCTACGGAACTCTGTTCCTATAATACCTGGCGTGGAGAGTTCTTCTGCTTCCACTAT GAATGAGCCAATACCTTTGGATTTCATGCTTTTCTTCAATAAGGCTCTTAAGAAGGATTTGGAGAACATTGTCCTGTACTCGGCTCGATTGGCTGAGAAC TTTGGGTTTCTCAAAGAATTCTGCCAACACTTCAATCTATTGCGGCACCAATATAAGTTCCACAGTAATGCTGAGGATGAATGGATATTTCCGTTACTCG AGGCTAAGGGAAAAGCTGAGAATATTAGTCACTCCTACACAATTGATCATAAGCTCAAAGTCGAGAATTTCCAAAAAATTTCCATCATTCTTGAAGAGAT GGTTGGCTTGCAGATGTCAGTGTCTATTGGCACTCATAAGCAGGCTCGGAAAATTATGAGGTGCAAGCATCTCTGTTTGAAACTCCAGCGCAGGTGCAAA TCTATTCAAAAACTATTCTCTGATCATATTCATCATGAAGAAATCGAACTCTGGCCAGTAATCAAGCAATGCTTGACAATTCAAGAGCAGGAAAAGGTTG TGGCGGGCATATTGGGGAGGACTAGAGCGGAAACATTACAAGTCATGATACCATGGTTGATTGGCTCTCTAAAACCAGAAGAGCAGCTTACAGTTATGTC CTTATGGCGTAAGGTCACAAAGGACACAAACTTCAGTGATTGGTTAGGAGAATGGTGGGAAGTGTGTGATAAATCTTCTATCTCTGAGGAGTTGAGTTCT TCATGTGATACAGACTCGCTGGAGACTGTCTCTAGATATTTGTCTAGTGAATCCCCTGATCAACAAGATGGCTTCCTCAACAACATAAGCATCAATTTGC CACAGAAAGATTACAATTGTGCTAACATCGTAGGAGATAGTGCATCCAAACATAATACAAAAACTGCTGCTGTGGATGAGGAAAATGAATGTCTAGACTG CATAAATATTGTCAATCAAGGTGATAAAAAGACATGCAATGAAGTAAGGGAAATCACAGATGAGAAGGCAAATAAAGCTCAACCTCTCCAAGAAAGTCTA AAATCCGTTGATCGTGAGTGCCTTTTATCAATTGGTCAAGACGACTTTGAAGCGGCATTAGGAAGAATTTCTCACGACGACACTCTAGATCTTCAGAAGA AATCACGTCTGATGCAGAACCTGCACACGAGGTCAGTATCAACTTAA
AA sequence Show only first row Show all	>Lus10042189 pacid=23153672 polypeptide=Lus10042189 locus=Lus10042189.g ID=Lus10042189.BGIv1.0 annot-version=v1.0 MDGSGGGDDDVVDDGSINSPIEDHGNEENRAEEGDEDEVNYETEFEVEGELFSGLRLADAPILFILCFHRAFRRELAELCRISLVASESGGGGSAIDELR CGFEFLKLAYDYHSAAEDEVIFLALDVHVKNIVCAYSLEHKSIDDAFATVSRCLKVLMEEKPETSFEPFQELVSCLSIIHSSICHHMLKEEKQGLKDLCC AEKFCQYKVTSNRDNTVWMCAGLRLQVFPLLVERFSPKEQASLVWQFLCSIPVILLEDFLPWMISLSPENQVDVTICIKEIVPDGPLQEVVISWLWRHAQ FPSRDLINTAGRGHMPHMIFSARCSEENWQSRTTDSVLAKKGHVVHDCFHLWHGVIIKSLWEVLEESYQIRSGSLLNVDPTLVRLKFLADVVTFYSNALK KFFDQMLNRLASDHFTGLYADQSPAESHLESIQKLLHDNAQNILPVHEVVEKLCEGMEPFVMEVGKQFKFLEAKVFPLLIDNCGQEMQPALFLYMSFGMM PLGLLKFVITWFAACLSKHELGLILQGLKQDESLASKSFLSLLHEWLLIGYSGKISVDDFGKDLQRMFETKSSFLIERSKEDVKFSSLPLNLKPYEASPH FKAEPVPLCENKLLSPSSLSFGFDKAKSYQTSYSGEINLHVLFPQTIKLRNSVPIIPGVESSSASTMNEPIPLDFMLFFNKALKKDLENIVLYSARLAEN FGFLKEFCQHFNLLRHQYKFHSNAEDEWIFPLLEAKGKAENISHSYTIDHKLKVENFQKISIILEEMVGLQMSVSIGTHKQARKIMRCKHLCLKLQRRCK SIQKLFSDHIHHEEIELWPVIKQCLTIQEQEKVVAGILGRTRAETLQVMIPWLIGSLKPEEQLTVMSLWRKVTKDTNFSDWLGEWWEVCDKSSISEELSS SCDTDSLETVSRYLSSESPDQQDGFLNNISINLPQKDYNCANIVGDSASKHNTKTAAVDEENECLDCINIVNQGDKKTCNEVREITDEKANKAQPLQESL KSVDRECLLSIGQDDFEAALGRISHDDTLDLQKKSRLMQNLHTRSVST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18910			zinc ion binding;zinc ion bind...		Lus10042189 [exp]	0	1
AT3G50380			Protein of unknown function (D...		Lus10022476 [exp]	11.3	0.8722
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10003354 [exp]	19.3	0.8648
AT3G62300		ATDUF7	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10000430 [exp]	23.3	0.8540
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010375 [exp]	29.6	0.8448
AT1G17450			B-block binding subunit of TFI...		Lus10037675 [exp]	29.7	0.8293
AT3G13330		PA200	proteasome activating protein ...		Lus10027111 [exp]	34.9	0.8420
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Lus10024387 [exp]	39.6	0.8103
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030625 [exp]	39.9	0.8260
AT1G17450			B-block binding subunit of TFI...		Lus10015661 [exp]	50.1	0.7868
					Lus10005027 [exp]	55.2	0.8169

Compare expression of checked genes

Lus10042189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.