Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18910 563 / 0 zinc ion binding;zinc ion binding (.1) AT1G74770 561 / 0 zinc ion binding (.1) AT3G18290 483 / 7e-157 BTS, EMB2454 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) AT3G62970 154 / 2e-42 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G22920 147 / 1e-39 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT5G18650 139 / 3e-37 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT5G25560 140 / 7e-37 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008628 [exp] 922 / 0 AT1G74770 1024 / 0.0 zinc ion binding (.1) Lus10005111 [exp] 496 / 7e-162 AT3G18290 1592 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10034346 [exp] 495 / 2e-161 AT3G18290 1467 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10042189 [exp] 471 / 2e-154 AT1G18910 583 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10008627 [exp] 318 / 1e-100 AT2G02800 475 / 6e-164 protein kinase 2B (.1.2) Lus10042188 [exp] 181 / 8e-54 AT1G74770 253 / 2e-78 zinc ion binding (.1) Lus10012811 [exp] 149 / 4e-40 AT5G18650 465 / 1e-167 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10033969 [exp] 134 / 4e-35 AT5G18650 449 / 2e-161 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10033112 [exp] 81 / 1e-17 AT1G18910 75 / 6e-16 zinc ion binding;zinc ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G066600 [exp] 670 / 0 AT1G74770 1199 / 0.0 zinc ion binding (.1) Potri.008G123300 [exp] 494 / 3e-161 AT3G18290 1604 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.010G122200 [exp] 490 / 8e-160 AT3G18290 1578 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.012G055100 [exp] 484 / 2e-157 AT3G18290 1641 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.008G205400 [exp] 152 / 1e-41 AT5G18650 466 / 2e-168 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.006G245400 [exp] 150 / 1e-40 AT5G25560 475 / 7e-171 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) Potri.009G005700 [exp] 141 / 2e-37 AT5G22920 437 / 8e-156 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.014G134400 [exp] 140 / 2e-37 AT3G62970 393 / 3e-139 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G121801 [exp] 135 / 1e-35 AT5G22920 398 / 6e-141 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01814 [flax] [poplar] Hemerythrin Hemerythrin HHE cation binding domain PF05495 [flax] [poplar] zf-CHY CHY zinc finger
Representative CDS sequence Show only first row Show all	>Lus10042190 pacid=23153704 polypeptide=Lus10042190 locus=Lus10042190.g ID=Lus10042190.BGIv1.0 annot-version=v1.0 ATGGGCGGCCACAGAGATGTCGACAATCGAAAGGGAGACGAATCCCAAGGAGCGAGTTATTGTTACCCAGCTGAGGAATCACTCCAAGAGGTGATACCTT TGGACTTCACGCTTTTCTTCAATAAGGCTCTCAAGGAGGATTTAGAAAGCCTTGTTCTTTATTCAGCTCAATTGACAGAAAACTTTGGGTTCCTCAAAGA ATTCTGCAAGCGCTTCAGTCTCTTACGGCACCAATATAAGTTCCACAGTTATGCAGAGGATGAATGGATATTTCCATTACTTGAGGCAAAGGAAAAGGCT AAGAATGTCACTCCCTCTTATGCCATTGATCATAAGCTTCAGGTAGAAAACTTCCAGAAAGTTTTTATTATTTTGGAAGAGATGTCTGGTTTGCAGATGT CGTTGTCTAGTGGCACTCCCATACAGGTTTGGAGAATCATGAAGTGGAATCATCTCTGCATGAAACTCCAACGGAGGTGCAAATCCATTCAGAAACTTCT CTCTGATCATATTCTTCGTGAAGAAATTGAACTCTGGCCAGTAATTAAGGAATGTTTGACGATCCAAGAGCAAGAAAAGGTTGTGGCGAATATTTTGGGG AGAACTGGAGCGGAAACGTTGAAAGCCATGATACCATGGCTGTTCAGCTCTTTAAAACCAGAAGAACATCTTATGGTTATGTCCTTATGGCGTAAGGTCA CAAAGCACACAAACTTCAGTGATTGGTTAGAAGAATGGTGGGAAGTGTGTGATAAAGCTCCTATCTCAGAGGAGTTGATTTCTTCATGTGACGCAGACTC TATGGAGACGGCGGGAGATAGTGTTTCCAAGGATGAAGTTAAGACTGCTGCGGTAGATGAAGAGGGAAATGAATGTTTGGACTGCATAAAGGTTCTCAAC CTAGGTGATGAGAAGACATGCAATGATGTAGCTGACATCACAGATGAGAAGGCAAATTCAGCTCAACCTTTCCAAGAAACTATAAAATTCATGAATCATG AGCACCACCTTTTCGCTCAAGACGATTTAGAAGCTGCAATAAGAAGAATCTTTCGTGACTCCTCATTTGACCCCAAGAAGAAATCACGTATGATCCAGAA CCTGCTAACGAGTCGGTGGCAACAGATGTATCATACAGATGAATTCCCCACAAGTAATGAGAAAATACTTCAAGGTCAACATCCATCATACCAAGACCCG ATAAAGTTAACCTTGGGTTGTAAACACTACAAGAGGAACTGTAAACTTCTTGCTGAATGTTGCAATCAACTCTATACATGCCTACGGTGCCATGATGAGT CAGCGGATCATTCAGCAGACAGAAGGACCATCACAAAGATGATGTGCATGAATTGTTTGACAATCCAACCTATACAGCAGACATGTGCAACTATCTCCTG CAACAGTTTGTCTATGGCTAAGTACTATTGCCGAATCTGCAAATTGTTCGACGATGAAGGGGAAATCTACCACTGCCCTTTCTGTAACATCTGCCGTGTG GGAAAGGGTTTAGGAATTGACTATTTCCATTGCATGAACTGTAATGGCTGCATGTCCAAGTCTTTGTCGTTCACCCATATATGCAGAGAGAAACGCTTTG AAGATAATTGCCCCATTTGCTACGGTTCCATCTTCACGTCTAGCATAACAGTGAAAGATACTCGCTGTGGCCATCTAATGCACGCCCCTTGTTTTCAGGA CTACACTAGCCATCATTATACCTGCCCGATCTGTTCCAAGTCACTTGGTGATATGAAGGAGTACTTCAATTTGCTGGATACCCTTTTGGCTGAAGAGAGA ACTCCAGATGAACATGCAAACCACACTCAGGTTTCTAATGATCTTTAA
AA sequence Show only first row Show all	>Lus10042190 pacid=23153704 polypeptide=Lus10042190 locus=Lus10042190.g ID=Lus10042190.BGIv1.0 annot-version=v1.0 MGGHRDVDNRKGDESQGASYCYPAEESLQEVIPLDFTLFFNKALKEDLESLVLYSAQLTENFGFLKEFCKRFSLLRHQYKFHSYAEDEWIFPLLEAKEKA KNVTPSYAIDHKLQVENFQKVFIILEEMSGLQMSLSSGTPIQVWRIMKWNHLCMKLQRRCKSIQKLLSDHILREEIELWPVIKECLTIQEQEKVVANILG RTGAETLKAMIPWLFSSLKPEEHLMVMSLWRKVTKHTNFSDWLEEWWEVCDKAPISEELISSCDADSMETAGDSVSKDEVKTAAVDEEGNECLDCIKVLN LGDEKTCNDVADITDEKANSAQPFQETIKFMNHEHHLFAQDDLEAAIRRIFRDSSFDPKKKSRMIQNLLTSRWQQMYHTDEFPTSNEKILQGQHPSYQDP IKLTLGCKHYKRNCKLLAECCNQLYTCLRCHDESADHSADRRTITKMMCMNCLTIQPIQQTCATISCNSLSMAKYYCRICKLFDDEGEIYHCPFCNICRV GKGLGIDYFHCMNCNGCMSKSLSFTHICREKRFEDNCPICYGSIFTSSITVKDTRCGHLMHAPCFQDYTSHHYTCPICSKSLGDMKEYFNLLDTLLAEER TPDEHANHTQVSNDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18910			zinc ion binding;zinc ion bind...		Lus10042190 [exp]	0	1
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10042561 [exp]	7.2	0.9348
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038526 [exp]	8.2	0.9378
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Lus10014920 [exp]	8.7	0.9357
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031158 [exp]	13.7	0.9220
AT5G67550			unknown protein		Lus10025583 [exp]	16.7	0.9358
AT2G43900			Endonuclease/exonuclease/phosp...		Lus10008330 [exp]	19.5	0.8812
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Lus10013339 [exp]	25.5	0.9250
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Lus10027611 [exp]	28.6	0.8764
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021312 [exp]	30.5	0.9303
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10008606 [exp]	30.5	0.8658

Compare expression of checked genes

Lus10042190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.