Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40830 45 / 4e-05 RHC1A RING-H2 finger C1A (.1.2.3) AT1G55530 45 / 4e-05 RING/U-box superfamily protein (.1) AT3G55530 44 / 5e-05 SDIR1 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) AT5G52140 44 / 5e-05 RING/U-box superfamily protein (.1) AT3G46620 43 / 0.0001 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G03450 43 / 0.0001 Transducin/WD40 repeat-like superfamily protein (.1) AT3G10815 42 / 0.0001 RING/U-box superfamily protein (.1) AT5G54990 42 / 0.0002 RING/U-box superfamily protein (.1) AT3G13430 42 / 0.0002 RING/U-box superfamily protein (.1.2.3) AT4G12190 40 / 0.0002 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013397 [exp] 48 / 4e-06 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10018167 [exp] 45 / 2e-05 AT3G19950 75 / 1e-15 RING/U-box superfamily protein (.1) Lus10002637 [exp] 45 / 3e-05 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10001582 [exp] 44 / 3e-05 AT2G40830 178 / 2e-55 RING-H2 finger C1A (.1.2.3) Lus10003698 [exp] 45 / 4e-05 AT2G40830 263 / 5e-87 RING-H2 finger C1A (.1.2.3) Lus10020258 [exp] 45 / 4e-05 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10042171 [exp] 44 / 5e-05 AT1G14200 60 / 2e-11 RING/U-box superfamily protein (.1) Lus10011392 [exp] 44 / 5e-05 AT5G59550 75 / 2e-15 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10004977 [exp] 44 / 6e-05 AT3G55530 371 / 1e-130 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G185200 [exp] 53 / 4e-08 AT3G02340 66 / 2e-12 RING/U-box superfamily protein (.1) Potri.001G103900 [exp] 53 / 4e-08 AT4G26400 85 / 2e-19 RING/U-box superfamily protein (.1.2) Potri.007G118000 [exp] 50 / 4e-07 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.017G038300 [exp] 49 / 1e-06 AT4G26400 68 / 2e-13 RING/U-box superfamily protein (.1.2) Potri.007G107000 [exp] 49 / 1e-06 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.004G122000 [exp] 46 / 3e-06 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.005G062400 [exp] 47 / 4e-06 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.017G102800 [exp] 47 / 6e-06 AT3G13430 69 / 9e-14 RING/U-box superfamily protein (.1.2.3) Potri.010G133200 [exp] 45 / 6e-06 AT3G61460 69 / 3e-15 brassinosteroid-responsive RING-H2 (.1) Potri.010G245801 [exp] 46 / 7e-06 AT2G27940 61 / 1e-11 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10042191 pacid=23153779 polypeptide=Lus10042191 locus=Lus10042191.g ID=Lus10042191.BGIv1.0 annot-version=v1.0 ATGCCGCTCTACTTATCCTTCGAATTCAACCCAATTCACCTAACCCTAGACCAAGATGAATTCCCACAATCCAGAGTCTTGAGGACCTTCACCGAGATGG AGGAGCAAGAAGGATCAGTCGAAGCCACTCTCACCAGGATCGTCGAAAGATTCCTTTTGGCGGTGACGAATCCACCCTCCACCAACAAGCCGATTCTGTC ACCATTGCTCAATTGCGTCGGCGAAGCCATGGAAACTGAAGGAATCCCCCGGCCGCTGCCGGAATACCGCCGCGAGGTGAAATTTGATGTCGTCCACGAT GATCATCTCCATCATTCTTCTTACAGGGCTTCCGTCCACCGTTACGCTGCTCAAGCGGTGTTTTGTGATGACGGCGATATAGGAGACGACGAATTGGAAG ACTGGATGCTGGATGATGAAAATGACGAGACTGAGGATGAAGACCTACGTATAGTAGGCGATGATTTTGAAGACTATATGATGGAAGATGAATATGACGA GGAGGAGGATGGAGAGGATGACGACGGCGATTTTGAAGACTGGATAATGGAAGATGAATATGACGAGGAGGATAGAGAGGATGACGGAAAGACGGTAGAT TTGGAAGGATGTTTGAAGGAAGTTAGAGTGGAGATTGAGGTTGATTGTGGGGTTTGTTTGGACGAGATACCAACGGGGATTGAAGCGGAGGCGATGGGTT GTGGACATATTTACCACGGCGGATGTATTCGAAAGTGGCTCCGGCAGACTAAAACCGCCGCCGCCCGCGGCCTCTGTAGCGTCCCGTGCGTATTAATAAT GGTTAGGGATGTATATGTATTTGTTAAATTAGCAAGATTGGAAAATTAA
AA sequence Show only first row Show all	>Lus10042191 pacid=23153779 polypeptide=Lus10042191 locus=Lus10042191.g ID=Lus10042191.BGIv1.0 annot-version=v1.0 MPLYLSFEFNPIHLTLDQDEFPQSRVLRTFTEMEEQEGSVEATLTRIVERFLLAVTNPPSTNKPILSPLLNCVGEAMETEGIPRPLPEYRREVKFDVVHD DHLHHSSYRASVHRYAAQAVFCDDGDIGDDELEDWMLDDENDETEDEDLRIVGDDFEDYMMEDEYDEEEDGEDDDGDFEDWIMEDEYDEEDREDDGKTVD LEGCLKEVRVEIEVDCGVCLDEIPTGIEAEAMGCGHIYHGGCIRKWLRQTKTAAARGLCSVPCVLIMVRDVYVFVKLARLEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03450			Transducin/WD40 repeat-like su...		Lus10042191 [exp]	0	1
AT2G42360			RING/U-box superfamily protein...		Lus10005275 [exp]	3.6	0.8952
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10025882 [exp]	11.0	0.8820
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10039103 [exp]	29.6	0.8723
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Lus10036429 [exp]	29.7	0.7772
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10004984 [exp]	30.4	0.8097
AT5G02260		ATHEXPALPHA1.10...	expansin A9 (.1)		Lus10023902 [exp]	41.0	0.8625
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10013589 [exp]	44.7	0.8647
AT2G27710			60S acidic ribosomal protein f...		Lus10019846 [exp]	62.4	0.7670
AT3G18950			Transducin/WD40 repeat-like su...		Lus10012036 [exp]	64.1	0.8354
AT4G23470			PLAC8 family protein (.1.2.3)		Lus10018826 [exp]	73.9	0.7699

Compare expression of checked genes

Lus10042191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.