Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02800 479 / 1e-168 Kin2, APK2B protein kinase 2B (.1.2) AT1G69790 471 / 7e-166 Protein kinase superfamily protein (.1) AT1G26970 468 / 5e-164 Protein kinase superfamily protein (.1) AT1G14370 459 / 2e-160 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT1G74490 432 / 2e-150 Protein kinase superfamily protein (.1) AT5G02290 427 / 2e-148 NAK Protein kinase superfamily protein (.1.2) AT2G28930 427 / 3e-148 APK1B protein kinase 1B (.1.2.3) AT1G07570 425 / 3e-147 APK1A Protein kinase superfamily protein (.1.2.3) AT3G28690 389 / 7e-133 Protein kinase superfamily protein (.1.2.3) AT3G55450 387 / 7e-133 PBL1 PBS1-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008627 [exp] 776 / 0 AT2G02800 475 / 6e-164 protein kinase 2B (.1.2) Lus10012850 [exp] 503 / 1e-177 AT2G02800 614 / 0.0 protein kinase 2B (.1.2) Lus10030496 [exp] 479 / 5e-169 AT2G02800 551 / 0.0 protein kinase 2B (.1.2) Lus10023794 [exp] 429 / 2e-149 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 429 / 4e-149 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 428 / 8e-149 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040806 [exp] 417 / 4e-144 AT2G28930 573 / 0.0 protein kinase 1B (.1.2.3) Lus10016537 [exp] 415 / 4e-143 AT2G28930 581 / 0.0 protein kinase 1B (.1.2.3) Lus10000954 [exp] 412 / 2e-142 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G093700 [exp] 518 / 0 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.008G148000 [exp] 507 / 1e-179 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.009G031300 [exp] 436 / 1e-151 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 434 / 6e-151 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G094300 [exp] 420 / 1e-145 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G056400 [exp] 417 / 2e-144 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 417 / 3e-144 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.007G062700 [exp] 393 / 1e-134 AT2G17220 469 / 2e-164 kinase 3, Protein kinase superfamily protein (.1.2) Potri.005G100900 [exp] 390 / 2e-133 AT2G17220 462 / 6e-162 kinase 3, Protein kinase superfamily protein (.1.2) Potri.009G020700 [exp] 389 / 2e-133 AT1G14370 446 / 7e-156 PBS1-like 2, kinase 1, protein kinase 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10042192 pacid=23153836 polypeptide=Lus10042192 locus=Lus10042192.g ID=Lus10042192.BGIv1.0 annot-version=v1.0 ATGTCGTGCTTCAATTTTAAGAAGAAGTGCCCAATACACAAAGGCATAGCAACGCCTCATGGCAAGAATCTATTAGACAACAATCACAAATCTTTCAGCT CTTTCCAGGCTTCTGCTTCTCCAGGACACTCAGATGTTCCGGAGAGAAGATGGCAGTCCTCGTCGAATCTGGATTCGAAGGTGGTTCCGAGCAGCAATCA AAAGGGTTCTAAGAAGGATAGCAGCATTCCAAGATCGGAGGGGGATATACTGTCATCTCCAAACTTGAAAGCCTTCACATTTGCTGAGCTAGTGGAGGCC ACTAGAGACTTCAACCCTGACACTGAGATTGGAGAAGGTGGGTTTGGATTTGTCTACAAAGGCTGGATTGATGAACAAACCTGTGCACCTGCTAGGGGCA AAACCGGAAAGGTTGTCGCCATCAAGAAGCTCAAACCGGACGGTTTTCAGGGTCATAAAGAGTGGCTGTCTGAAGTGAACTATCTTGGCAGACTCCATCA CCCGAACCTTGTCAAACTTATCGGTTACTGTTTAGACGGAGACAATCGCCTTCTGGTTTATGATTACATGCCCAAAGGAAGTCTGGAGGATCATCTGTTT GAAAGTAAAGGTGAGCCTCTTCCTTGGGAAACAAGGATGAAAGTCGCAATGGGTGCTGCTCGTGGCCTTTCCTTCCTGCATGACTCCGAACAGCAAGTTA TCTACCGCGATTTCAAGGCCTCCAACATTCTTTTAGATTCGGACTTCAATCCAAGGCTTTCAGACTTTGGCTTAGCAAAGGCGGGTCCCACAGGAGGTCG AACTCACGTTTCGACTCAAGTTCTGGGCACTCGAGGCTACGCTGCGCCTGAGTACATAGCTACAGGTCGCCTAACCACAAAATGTGACGTGTATAGCTTC GGAGTGGTGTTGATGGAGCTTTTAACAGGGCGCCAAGTTGTGGACAAGACCAAAGTAGGGGTGGAGCAGAACCTAATAGAATGGGTAAGACCTTACTTAC ACGACAAGCGAAAACTGTTTCGAGTTATGGACACCAAGCTGCAAGGTCAGTACCCTCAGAAAGGAGCCTTCATGGTCGCTTTCCTAGCCTTGCACTGCCT TGGAGACGCCAAAGTCCGGCCAACCATGGCCGAGGTCGTGACCATACTCGAGAGAGTGATGTCTGCAAAACGTACAAAGAGCCCTAACCCATCGCAGGTA TCGGAATCTCCAAATGACGGCTCACTCATTGGAATGTTACCAGATGTGAATTCTCTGCCTCGAAAGTCTCTCGAGGAACGATAA
AA sequence Show only first row Show all	>Lus10042192 pacid=23153836 polypeptide=Lus10042192 locus=Lus10042192.g ID=Lus10042192.BGIv1.0 annot-version=v1.0 MSCFNFKKKCPIHKGIATPHGKNLLDNNHKSFSSFQASASPGHSDVPERRWQSSSNLDSKVVPSSNQKGSKKDSSIPRSEGDILSSPNLKAFTFAELVEA TRDFNPDTEIGEGGFGFVYKGWIDEQTCAPARGKTGKVVAIKKLKPDGFQGHKEWLSEVNYLGRLHHPNLVKLIGYCLDGDNRLLVYDYMPKGSLEDHLF ESKGEPLPWETRMKVAMGAARGLSFLHDSEQQVIYRDFKASNILLDSDFNPRLSDFGLAKAGPTGGRTHVSTQVLGTRGYAAPEYIATGRLTTKCDVYSF GVVLMELLTGRQVVDKTKVGVEQNLIEWVRPYLHDKRKLFRVMDTKLQGQYPQKGAFMVAFLALHCLGDAKVRPTMAEVVTILERVMSAKRTKSPNPSQV SESPNDGSLIGMLPDVNSLPRKSLEER

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10042192 [exp]	0	1
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10010061 [exp]	1.7	0.9201
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Lus10016122 [exp]	3.0	0.8658
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10018329 [exp]	3.7	0.8322
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008996 [exp]	3.7	0.9089
					Lus10040168 [exp]	4.9	0.8431
AT4G29310			Protein of unknown function (D...		Lus10034991 [exp]	6.3	0.8527
AT5G62360			Plant invertase/pectin methyle...		Lus10031717 [exp]	6.3	0.8644
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Lus10033234 [exp]	6.7	0.8514
AT1G54200			unknown protein		Lus10026463 [exp]	7.2	0.8335
AT4G38840			SAUR-like auxin-responsive pro...		Lus10010714 [exp]	8.4	0.8619

Compare expression of checked genes

Lus10042192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.