Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39850 327 / 1e-108 Ribosomal protein S4 (.1) AT5G15200 325 / 5e-108 Ribosomal protein S4 (.1.2) AT1G74520 254 / 5e-81 ATHVA22A HVA22 homologue A (.1) AT1G69700 197 / 4e-59 ATHVA22C HVA22 homologue C (.1) AT5G62490 182 / 7e-54 ATHVA22B ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22 homologue B (.1) AT2G42820 132 / 9e-36 HVA22F HVA22-like protein F (.1) AT3G47670 126 / 3e-32 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G24960 120 / 6e-32 ATHVA22D ARABIDOPSIS THALIANA HVA22 HOMOLOGUE D, HVA22 homologue D (.1.2.3) AT5G50720 117 / 4e-31 ATHVA22E ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) AT1G53840 97 / 6e-21 ATPME1 pectin methylesterase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008625 [exp] 393 / 1e-133 AT3G47670 146 / 8e-43 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10008624 [exp] 383 / 2e-130 AT5G15200 342 / 8e-122 Ribosomal protein S4 (.1.2) Lus10012839 [exp] 338 / 9e-113 AT5G15200 333 / 4e-118 Ribosomal protein S4 (.1.2) Lus10030487 [exp] 338 / 9e-113 AT5G15200 333 / 4e-118 Ribosomal protein S4 (.1.2) Lus10008623 [exp] 295 / 1e-96 AT1G74520 234 / 5e-80 HVA22 homologue A (.1) Lus10023605 [exp] 268 / 1e-85 AT1G74520 246 / 7e-84 HVA22 homologue A (.1) Lus10024234 [exp] 268 / 2e-85 AT1G74520 244 / 5e-83 HVA22 homologue A (.1) Lus10037191 [exp] 235 / 2e-73 AT1G69700 231 / 6e-78 HVA22 homologue C (.1) Lus10031386 [exp] 119 / 5e-31 AT2G42820 246 / 4e-85 HVA22-like protein F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G209700 [exp] 338 / 4e-113 AT5G39850 325 / 6e-115 Ribosomal protein S4 (.1) Potri.018G062300 [exp] 338 / 4e-113 AT5G39850 332 / 1e-117 Ribosomal protein S4 (.1) Potri.016G076500 [exp] 336 / 3e-112 AT5G39850 350 / 1e-124 Ribosomal protein S4 (.1) Potri.016G076800 [exp] 336 / 3e-112 AT5G39850 350 / 1e-124 Ribosomal protein S4 (.1) Potri.007G056100 [exp] 327 / 1e-108 AT5G39850 337 / 1e-119 Ribosomal protein S4 (.1) Potri.011G094500 [exp] 325 / 1e-107 AT5G39850 336 / 3e-119 Ribosomal protein S4 (.1) Potri.012G069300 [exp] 269 / 9e-87 AT1G74520 259 / 1e-89 HVA22 homologue A (.1) Potri.015G062800 [exp] 267 / 8e-86 AT1G74520 255 / 4e-88 HVA22 homologue A (.1) Potri.006G209801 [exp] 196 / 7e-60 AT5G15200 200 / 7e-67 Ribosomal protein S4 (.1.2) Potri.001G006000 [exp] 135 / 1e-36 AT2G42820 235 / 1e-80 HVA22-like protein F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03134 [flax] [poplar] TB2_DP1_HVA22 TB2/DP1, HVA22 family CL0492 [flax] [poplar] S4 PF00163 [flax] [poplar] Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain CL0492 [flax] [poplar] S4 PF01479 [flax] [poplar] S4 S4 domain CL0492 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10042193 pacid=23153660 polypeptide=Lus10042193 locus=Lus10042193.g ID=Lus10042193.BGIv1.0 annot-version=v1.0 ATGGGATCTGGAGCTGGAAGCTTCCTGAAGTTGGTACTCAAGAACTTCGATGTTCTTGCTGGGCCTGTGGTTAGTCTCGTTTATCCTCTGTATGCTTCAG TTCGGGCAATAGAGACCAAGTCTCAGACTGATGATCGCCAATGGCTTACCTATTGGGTTCTCTACTCCATGATCACACTCACTGAGCTCACCTTTGCCAC CGTTATTGAATGGATCCCTATCTGGTCGTATGCGAAGCTCATTTTCACATGTTGGTTGGTCCTCCCGTACTTCAGCGGTGCTGCTTACGTATACGAGCAC TTTCTGAGGCCTCTCTTCGTCAACCCGCAACAGACCGTAAACATCTGGTACGTTCCCAAGATGAAGGATGTCTTCACGAGGAAAGATGATGTTCTGACTG CTGCCGAGAAGTACATTGAAGAGCATGGCACCGAGGCGTTTGAGGCTATGATTAACAGGGTATTTGACCGTTTACTGTGCTACATTGTCTGGTTTACTGT GCTCATTTGTGGGATGAATGAACTCTTGTGTTTGTTTAACGTGTATTCGATCGGGGTTGCTTTTCGCAGGCTGATAAATCCAGGAGTGCCAGCAGTCACT CCATATTCGGGCATCATGAAGACTACAGGTACTGAGTACCATGACCGCGATGGTAAGACATTCAAGAAGCCACGTCGTCCTTACGAGAAGGAGCGTCTGG ATTCTGAGCTGAAGCTAGTGGGAGAGTATGGTCTCCGTGCCAAGAGAGAGCTGTGGAGGGTCCAGTACGCATTGAGCCGTATCCGTAACGCCGCTAGAAT GCTTTTGACCCTGGATGAGAAGAACCCGCGTAGGATCTTTGAGGGTGAAGCTCTTCTCCGAAGGATGAACCGTTATGGACTCTTGGATGAGTCTCAGAAT AAGCTCGATTATGTGCTGGCTCTGACCGTGGAGAATTTCCTTGAGCGCCGGCTGCAGACTCTTGTTTTCAAGTCTGGAATGGCCAAGTCTATCCACCATG CCCGTGTTCTCATCAGACAGAAACACATCAGGGTTGGAAGGCAGGTGGTGAACATACCTTCATTCATGGTAAGACTGGATTCACAGAAGCACATTGATTT CTCGATCAGCAGCCCGTTCGGTGGTGGCCGTGCTGGAAGAGTGAAGAGGAAGAACATGGCTGCATCATCCAAGAAGCAAGCCGGCGGTGGTAGCGACGAC GAGGGAGCAGACTTGCCGCCTGTTCTTGATGGTACTCTTTACGAGAGTCATTTGGGTTGTTTCTGTTATTATTTAAGAACCGAGCAGATTTTGGCTCCCT TCTCAAAACCTTCTTGTTTGGCAATTCCACACCAAGCAATCAACAATGGAATCAATCAACTTCGCCAAGGCTACGGCAAAGTAAACACCTCAACTCATCT TCAACCCCAAGATCAACCTCCTCATCGCCCAACCAAATCCATCAGAAACCCCCTAACCGCCGTAGCCTCCGCCGTCATCGTCCTCCTCATCTTGCTCCTC GCCGTCCACAACCACAACAGCAACCAATCCCTAAAGAAGCCGGAACAACATCTCCCTCCATCCGCCTCCGCCGCCGATTCAATCAGATTCGTCTGTAACG TCACCCGCTATCCAAACCCCTGCTTCACCGCCATATCCTCAGCTATGGACTCGAGCTCTGCTTCCGATCCGGAAGCGATCCTTAAAGTCTCGATCCGAGT CTCTTTAACTAGGATCTCGGATCTGGCTTCCTTGTTTCGGAACTCTTCCACCTCGAAGTCGCCGGCTGTGGACGACTGCGTTGACCAGCTGGAGGAGGCG AAGAGCAATCTGAAGCAGTCGATTGCGGCTATGGAGGAGAAGGCGTTGACGGAAGAGAAGATCGCTGACTTGAAGACGTGGATAAGCGCTGCGATGACCG ACGAGGAGACTTGCCGGGACGGGATGGAGGAAATGGGAGCGGCGGTGGCGGAAGGAATGAAGGCGGAGATGGAGGATTGTACGGAGATGATGAGTAATAG CTTGGCGATTCTCGCTAATTTGCCTTCATTGCTGCAAATTTCCCGCCTCCGATTCCATTAG
AA sequence Show only first row Show all	>Lus10042193 pacid=23153660 polypeptide=Lus10042193 locus=Lus10042193.g ID=Lus10042193.BGIv1.0 annot-version=v1.0 MGSGAGSFLKLVLKNFDVLAGPVVSLVYPLYASVRAIETKSQTDDRQWLTYWVLYSMITLTELTFATVIEWIPIWSYAKLIFTCWLVLPYFSGAAYVYEH FLRPLFVNPQQTVNIWYVPKMKDVFTRKDDVLTAAEKYIEEHGTEAFEAMINRVFDRLLCYIVWFTVLICGMNELLCLFNVYSIGVAFRRLINPGVPAVT PYSGIMKTTGTEYHDRDGKTFKKPRRPYEKERLDSELKLVGEYGLRAKRELWRVQYALSRIRNAARMLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQN KLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRLDSQKHIDFSISSPFGGGRAGRVKRKNMAASSKKQAGGGSDD EGADLPPVLDGTLYESHLGCFCYYLRTEQILAPFSKPSCLAIPHQAINNGINQLRQGYGKVNTSTHLQPQDQPPHRPTKSIRNPLTAVASAVIVLLILLL AVHNHNSNQSLKKPEQHLPPSASAADSIRFVCNVTRYPNPCFTAISSAMDSSSASDPEAILKVSIRVSLTRISDLASLFRNSSTSKSPAVDDCVDQLEEA KSNLKQSIAAMEEKALTEEKIADLKTWISAAMTDEETCRDGMEEMGAAVAEGMKAEMEDCTEMMSNSLAILANLPSLLQISRLRFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39850			Ribosomal protein S4 (.1)		Lus10042193 [exp]	0	1
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10019881 [exp]	1.7	0.8900
AT1G61570		TIM13	translocase of the inner mitoc...		Lus10017352 [exp]	2.4	0.8712
AT2G31610			Ribosomal protein S3 family pr...		Lus10033442 [exp]	3.2	0.8803
AT3G44620			protein tyrosine phosphatases;...		Lus10019533 [exp]	6.5	0.8598
AT3G49080			Ribosomal protein S5 domain 2-...		Lus10038852 [exp]	6.7	0.7865
AT5G48760			Ribosomal protein L13 family p...		Lus10022793 [exp]	6.9	0.8684
AT4G15000			Ribosomal L27e protein family ...		Lus10010461 [exp]	7.7	0.8638
AT3G02080			Ribosomal protein S19e family ...		Lus10030702 [exp]	9.2	0.8609
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10007376 [exp]	9.4	0.8518
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10023825 [exp]	9.9	0.8472

Compare expression of checked genes

Lus10042193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.