Plant FIBer expression Database

Lus10042196 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G28540 70 / 2e-16 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025433
[exp]
124 / 3e-37 AT1G28540 111 / 7e-33 unknown protein
Lus10024553
[exp]
0 / 1 AT1G28540 48 / 6e-09 unknown protein
Lus10015296
[exp]
0 / 1 AT4G17500 73 / 7e-17 ethylene responsive element binding factor 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G051300
[exp]
67 / 4e-15 AT1G28540 102 / 1e-29 unknown protein
PFAM info
Representative CDS sequence
>Lus10042196 pacid=23153738 polypeptide=Lus10042196 locus=Lus10042196.g ID=Lus10042196.BGIv1.0 annot-version=v1.0
ATGCATCGGAAATCGTCGAGCTCATTCCACTATTTAAAATTGTCAAGTTTTCAAAAAAAAAAATTGAACACCATCACCGAAACAGAGCCATGGCTGAACC
CGAAAAACCAAATTCTCCACCTCCGACGGAGCTTAAGGGCGTCGGCAAAACAACAACAACAACGCCAGCTACTCGGGTCAAAAGCTCCACTACCCAAACC
CGCCGGAGGGGGTAAACTGGATGCGGCGTGTTTAAGGAATCAGTGGCAATTTTCCATAAAGCAGTACAGCAGGTGGTACTCTCAAGCTTGGGGGACGGTG
AGAACCTCGTTATTCGCTCTCGGCTGGATCACCAAGGGAGAAAATCCTCTCCCTTCTTTCAAATCCGATTACAACAACGCCGATCATCCTCCTTCACCTT
CGGTTAAGGACTCGGATGCTCATTCTCGCCGTTGA
AA sequence
>Lus10042196 pacid=23153738 polypeptide=Lus10042196 locus=Lus10042196.g ID=Lus10042196.BGIv1.0 annot-version=v1.0
MHRKSSSSFHYLKLSSFQKKKLNTITETEPWLNPKNQILHLRRSLRASAKQQQQRQLLGSKAPLPKPAGGGKLDAACLRNQWQFSIKQYSRWYSQAWGTV
RTSLFALGWITKGENPLPSFKSDYNNADHPPSPSVKDSDAHSRR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G28540 unknown protein Lus10042196
[exp]
0 1
AT1G15740 Leucine-rich repeat family pro... Lus10035912
[exp]
2.0 0.8668
AT1G50420 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) Lus10019773
[exp]
2.2 0.8051
AT3G13000 Protein of unknown function, D... Lus10034787
[exp]
5.3 0.8055
AT2G27310 F-box family protein (.1) Lus10003731
[exp]
5.5 0.8270
AT3G10840 alpha/beta-Hydrolases superfam... Lus10003690
[exp]
6.6 0.8339
AT4G40080 ENTH/ANTH/VHS superfamily prot... Lus10002641
[exp]
8.2 0.7351
Lus10007307
[exp]
10.6 0.7734
AT3G01470 HD HD-ZIP-1, HAT5,... HOMEODOMAIN PROTEIN FROM ARABI... Lus10025232
[exp]
12.5 0.8009
AT5G44005 unknown protein Lus10003608
[exp]
17.0 0.7812
AT4G31020 alpha/beta-Hydrolases superfam... Lus10040038
[exp]
17.9 0.7817

Lus10042196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.