Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26850 640 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 581 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 497 / 6e-170 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 484 / 4e-165 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 484 / 4e-165 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 478 / 3e-162 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 432 / 9e-145 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 375 / 5e-123 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G00740 371 / 2e-121 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G19120 371 / 2e-121 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008619 [exp] 911 / 0 AT1G26850 727 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10039385 [exp] 777 / 0 AT1G26850 936 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10030479 [exp] 658 / 0 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10037180 [exp] 656 / 0 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10012830 [exp] 654 / 0 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10036747 [exp] 648 / 0 AT1G26850 1042 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10006626 [exp] 626 / 0 AT1G26850 702 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10011045 [exp] 621 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003014 [exp] 618 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G069000 [exp] 713 / 0 AT1G26850 980 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.010G094100 [exp] 656 / 0 AT1G26850 1031 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.008G147800 [exp] 644 / 0 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.003G087600 [exp] 633 / 0 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 628 / 0 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 507 / 2e-173 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 503 / 2e-172 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 501 / 2e-171 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 501 / 2e-171 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 498 / 2e-170 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10042197 pacid=23153920 polypeptide=Lus10042197 locus=Lus10042197.g ID=Lus10042197.BGIv1.0 annot-version=v1.0 ATGGGAACGAAAGGGAATTCTGGGGAACTAATTAGAAGTGGGGGTTCCCTTTCAATCATCATAGTGGTGGGTTTATGCATTTCCTTCTACCTGTTGGGCT CGTGGCAGTTCAGTAAGCGTTGGAAGGGTGATACGCTTACTGTATTTGTCATGAATCATACAGATTGTACTATGTTCGACAGATTGACTTATGAGGTAAG TGGGGAAACTGGCATAGCTAACGATGGCTTTGGATGGGATGATGTGAAAAAGATTCCAGCTTGTGATGAAATCTATGTTGACTACACTCCTTGTCATGAT CAAACGAAGGAAAGGCATTGTCCTGCTAATTCGGAGAAGCTGCATTGTCTTATCCCTGCTCCCAAAGGGTATGCAACACCTTTCGAATGGCCCAAGAGCC GGGATTATGTCCCCTCCGCAAATGTGCCTTACAAGGCTGACCAAAAAGTACAATATTTTTATGAGAACATTGTGTTAAGGATTCCGGGCGAATTCCAGTT CCCTGGTGGCGCAAGAGCTTATATCGATCGACTTTCTTCTGCAATCCCGTTGGATGGTGGGATGATTCGAACTGCTTTGGATATTGGATGTGGGGTGGGT AGTTTGGGTGCATACCTTTTCGAAAAGAATGTCCTAACCGTGTCATATGCCCCAAGAGACTCTGTTGAAAGACTTCAGTTTGCCTTGGAAAGAGGTGTTC CAGTTGTCATTGGTGTTCTTGAGACCATCAAGCTGCCATTTCCTTCTGGAGCATTTGACATGGCCCACTGTTCTAACTGCTTGATTCCATGGGATACAAA TGATGGAATATACTTGATGGAAGTCGATCGTGTTCTAAGGCCAGGTGGTTACTGGATTCTTTCTGGTCCTCCATTCAACTGGAGAACACATTACGGGACA TGGAAGAGAAGAAAAGTGGATCTCGCTGCTGAACAAATTAGGATTGAAGAAACTGCCAGGCTTCTTTGCTGGGAAAAGATTGATGATGAGTTGGGTGATA CAGCTATCTGGCAGAAACCACTTGATCCTGATTCTTGCACTGAGCAGCAACAGCCTACCATTTGCGAATCCTCGAATCCCAACAATGTCTGGTACAAGAA AATGGAGCCATGTGTAACTAGTTATAATCGGTCTGAGTGGAAGCCATTTCCTGAAAGACTCAACTCCATCATACCTTCCAGAATATCCAGTGGGTCTATC CATGGAGTGTCTCCAAACCAGTACCTGGAGGACAGCAGGATCTGGAGGAAGCATGTGAATCGTTCTTATAGACGGATAAACAAAATCCTAGAGACGGGGA GATACCGCAACGTTATGGACATGAATGCCGGCATGGGTGGCTTTGCTGCAGCTCTTGAATCTCCTAAACTGTGGGTTATGAACGTTATCCCTACAATTGC TCAGGACACCTTAGGTGTTATATATGAGCGTGGACTGATCGGCATATACCATGACTGGTGTGAAGCTTTCTCTACGTATCCAAGGAGTTATGACCTCATT CATGCAGATGGAGTATTCAGCTTGTACAAGGACAACTGCAGCATGGAAGACATTCTGCTGGAGATGGATCGGATACTGAGGCCTGAAGGAACGGTCATAA TTCGCGACGATGTGGACGTGCTTGTGAAGGTGAAGAAGATTGTGGGAGGGATGAGATGGAAGACGAAAATGGTTGATCATGAAGATGGGCCAACTGTTCG GGAGAAGGTGATGTTTGGTGTCAAACAATACTGGGTTGCAGGAGAAGTGAATACCAACTAA
AA sequence Show only first row Show all	>Lus10042197 pacid=23153920 polypeptide=Lus10042197 locus=Lus10042197.g ID=Lus10042197.BGIv1.0 annot-version=v1.0 MGTKGNSGELIRSGGSLSIIIVVGLCISFYLLGSWQFSKRWKGDTLTVFVMNHTDCTMFDRLTYEVSGETGIANDGFGWDDVKKIPACDEIYVDYTPCHD QTKERHCPANSEKLHCLIPAPKGYATPFEWPKSRDYVPSANVPYKADQKVQYFYENIVLRIPGEFQFPGGARAYIDRLSSAIPLDGGMIRTALDIGCGVG SLGAYLFEKNVLTVSYAPRDSVERLQFALERGVPVVIGVLETIKLPFPSGAFDMAHCSNCLIPWDTNDGIYLMEVDRVLRPGGYWILSGPPFNWRTHYGT WKRRKVDLAAEQIRIEETARLLCWEKIDDELGDTAIWQKPLDPDSCTEQQQPTICESSNPNNVWYKKMEPCVTSYNRSEWKPFPERLNSIIPSRISSGSI HGVSPNQYLEDSRIWRKHVNRSYRRINKILETGRYRNVMDMNAGMGGFAAALESPKLWVMNVIPTIAQDTLGVIYERGLIGIYHDWCEAFSTYPRSYDLI HADGVFSLYKDNCSMEDILLEMDRILRPEGTVIIRDDVDVLVKVKKIVGGMRWKTKMVDHEDGPTVREKVMFGVKQYWVAGEVNTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10042197 [exp]	0	1
AT3G44630			Disease resistance protein (TI...		Lus10042777 [exp]	1.0	0.8654
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10016521 [exp]	1.4	0.8639
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10008619 [exp]	4.5	0.8482
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10042057 [exp]	6.3	0.8208
					Lus10023092 [exp]	11.0	0.8106
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10001934 [exp]	11.7	0.8036
AT2G25430			epsin N-terminal homology (ENT...		Lus10019402 [exp]	12.8	0.8316
AT4G12010			Disease resistance protein (TI...		Lus10042778 [exp]	17.9	0.8473
AT1G06240			Protein of unknown function DU...		Lus10033620 [exp]	19.1	0.8475
AT4G01400			unknown protein		Lus10012607 [exp]	21.9	0.7929

Compare expression of checked genes

Lus10042197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.