Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01510 183 / 8e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 169 / 8e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 167 / 2e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28690 164 / 4e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G77170 163 / 4e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 165 / 7e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G36730 163 / 9e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 166 / 1e-47 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 160 / 4e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G49142 164 / 5e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008618 [exp] 360 / 8e-123 AT4G33990 367 / 4e-117 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002024 [exp] 175 / 3e-52 AT5G56310 344 / 6e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013319 [exp] 167 / 8e-49 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10022890 [exp] 169 / 1e-48 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005207 [exp] 165 / 1e-47 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10030124 [exp] 163 / 1e-47 AT3G15130 613 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 164 / 1e-46 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10000706 [exp] 163 / 2e-46 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10029344 [exp] 161 / 2e-46 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G252400 [exp] 181 / 1e-54 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G258500 [exp] 181 / 5e-53 AT2G40720 481 / 4e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G001000 [exp] 176 / 5e-52 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G103600 [exp] 173 / 7e-51 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G019900 [exp] 169 / 9e-49 AT4G02750 542 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 169 / 1e-48 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G044700 [exp] 169 / 1e-48 AT3G22690 582 / 0.0 unknown protein Potri.005G019400 [exp] 165 / 1e-48 AT1G09190 574 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G005700 [exp] 167 / 3e-48 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G208000 [exp] 166 / 4e-48 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10042198 pacid=23153537 polypeptide=Lus10042198 locus=Lus10042198.g ID=Lus10042198.BGIv1.0 annot-version=v1.0 ATGTACGCAAAATGTGGGGATATGGATCGAGCTCGATCGGTCTTCGATGAGATACTGTGTAAGGATGTAATATCTTGGACAACTATGATTCTAGGTCATG CCATCAATGGTGAAGGAGAGGAAGCCCTCCTTGCTTTCCACGAAATGCGTGAGGAAGGAATCAGGCCGAATTTCGTGACATTCATCGGGGTTCTGTCGGC ATTTAATCATTCCGGTCTGGTAGAAGCAGGCCAGAAGTTATACGAGATGATGATCCAGGCTGACGATATTGAGCCAAAGATGGAGCATTACGGATGTATG ATCGATATGCTTGCCCGAGCAGGGATGCTCGAGGAGGCAAAGAAGTTCGTGGAGAGAATGCCGGTGGAGCCAAATGCAGCTGTTTGGAGGATGCTGGTTA ATGCTTGCAGAGGTCACAGTGCTACTAAACTCGGATTGAGCTCAGTGGCTAACCTCTTTCCAGGGAGGAATTCAACTGTGGTTGCTGAAAATCGGATTAT TTGTGCTAACATGTTTGCTGAGGCAGAGAGATGGAATGAAGTTTTGCAAGATCGACCTATTATGGTTGCCCAGAAGGATCGTAAAGTAGCTGGCAAAAGC TCCACTGTAACGTAA
AA sequence Show only first row Show all	>Lus10042198 pacid=23153537 polypeptide=Lus10042198 locus=Lus10042198.g ID=Lus10042198.BGIv1.0 annot-version=v1.0 MYAKCGDMDRARSVFDEILCKDVISWTTMILGHAINGEGEEALLAFHEMREEGIRPNFVTFIGVLSAFNHSGLVEAGQKLYEMMIQADDIEPKMEHYGCM IDMLARAGMLEEAKKFVERMPVEPNAAVWRMLVNACRGHSATKLGLSSVANLFPGRNSTVVAENRIICANMFAEAERWNEVLQDRPIMVAQKDRKVAGKS STVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01510			Tetratricopeptide repeat (TPR)...		Lus10042198 [exp]	0	1
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10032179 [exp]	15.8	0.7954
AT5G65820			Pentatricopeptide repeat (PPR)...		Lus10011566 [exp]	19.4	0.7811
AT1G76990		ACR3	ACT domain repeat 3 (.1.2.3.4....		Lus10028646 [exp]	21.9	0.7592
AT5G65280		GCL1	GCR2-like 1 (.1)		Lus10035926 [exp]	24.2	0.7673
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022541 [exp]	28.0	0.7766
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10002243 [exp]	34.6	0.7666
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10023519 [exp]	39.9	0.7661
AT1G20650		ASG5	ALTERED SEED GERMINATION 5, Pr...		Lus10013222 [exp]	82.0	0.7192
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10003471 [exp]	86.1	0.7406
AT5G43870			Plant protein of unknown funct...		Lus10021903 [exp]	89.7	0.7293

Compare expression of checked genes

Lus10042198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.