Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23960 302 / 1e-95 ATTPS21 terpene synthase 21 (.1.2) AT3G14540 261 / 2e-79 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 259 / 1e-78 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14520 255 / 2e-77 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G31950 249 / 4e-75 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14490 246 / 5e-74 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 240 / 1e-71 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G16740 238 / 3e-71 ATTPS03 terpene synthase 03 (.1.2) AT4G16730 237 / 7e-71 AtTPS02 terpene synthase 02 (.1) AT4G15870 232 / 2e-68 ATTS1 terpene synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008614 [exp] 815 / 0 AT5G23960 345 / 1e-112 terpene synthase 21 (.1.2) Lus10008611 [exp] 749 / 0 AT5G23960 348 / 4e-113 terpene synthase 21 (.1.2) Lus10042204 [exp] 745 / 0 AT5G23960 347 / 4e-113 terpene synthase 21 (.1.2) Lus10002660 [exp] 521 / 1e-180 AT3G14520 310 / 4e-98 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10014724 [exp] 485 / 1e-166 AT5G23960 314 / 2e-100 terpene synthase 21 (.1.2) Lus10040043 [exp] 472 / 2e-161 AT5G23960 329 / 7e-106 terpene synthase 21 (.1.2) Lus10031590 [exp] 388 / 7e-129 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2) Lus10031589 [exp] 324 / 1e-103 AT5G23960 318 / 3e-101 terpene synthase 21 (.1.2) Lus10006355 [exp] 226 / 5e-66 AT2G24210 361 / 7e-117 terpene synthase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095500 [exp] 469 / 1e-160 AT5G23960 408 / 6e-137 terpene synthase 21 (.1.2) Potri.015G085500 [exp] 401 / 3e-134 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 399 / 4e-133 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.011G142800 [exp] 397 / 4e-132 AT5G23960 405 / 2e-135 terpene synthase 21 (.1.2) Potri.019G020367 [exp] 323 / 7e-104 AT5G23960 494 / 7e-171 terpene synthase 21 (.1.2) Potri.019G023004 [exp] 319 / 3e-102 AT5G23960 474 / 8e-163 terpene synthase 21 (.1.2) Potri.019G045100 [exp] 318 / 6e-102 AT5G23960 474 / 2e-162 terpene synthase 21 (.1.2) Potri.019G016700 [exp] 315 / 1e-100 AT5G23960 482 / 6e-166 terpene synthase 21 (.1.2) Potri.007G074466 [exp] 309 / 3e-98 AT5G23960 443 / 1e-150 terpene synthase 21 (.1.2) Potri.019G016900 [exp] 308 / 3e-98 AT5G23960 474 / 6e-163 terpene synthase 21 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10042202 pacid=23153818 polypeptide=Lus10042202 locus=Lus10042202.g ID=Lus10042202.BGIv1.0 annot-version=v1.0 ATGGAGAGTAGTAATTGTACTGAAGATGATGTTCATCGTCCCACAGCAAAATTCCATCCCTCGCCATGGGGTGACTTCTTCATTACCCACGTCTTCCATT CTCATCAGGTTGTAAGAGATTGGAATGAAAGAATCGAAGCATTGACACCTGAAGTGGCGATGATGCTGTTGGCCCCTCAACAAGGACTGTGGGAGAAGTT GAATCTAGTGGATGTGATTCAAAGATTAGGAATCGGTTACCATTTCAAAGAAGAAATCCAACGACTCCTCCAACAAGTTTATAGCGACCACTGCAGTACT ATTACAGTTGATCATCACGATCATGATCTCTGCACAATTTCTCTCTGTTTCAGACAGCTTAGACAACATGGCTACGATGTGTCCACTGGTATATATATTC AAGAAGTTCATGACAGAAGAAGGAAAGTTCCAGAAAGAATTAGCAGAGGACATGGAAGGAATGTTAAGCTTGTACGAAGCTGGATACATGAGAGCGTGTT AGACGAAGCAATTGAGTTCACAAAATCGCACCTCAACTCTGCAATATTATTAATGGAGACGACAGAATTAGATTCCTCAGTACTAGCTGATCGAATCAGT CATGCATTGGAAAGACCACTTCGTAAAGGAGTGGCAAAGGTTGAGCAACTCTTCTTCATCTCTGTTTATGAACAAATGCACGGCCATGATGAAACCCTGC TAACCTTGGCCAAGCTGAGTTTCAATGTGCTGCAGAACATGTACCAAAATGAACTCAAAGTCCTTACCAAGTGGTGGATTGATTTGGATTTGATAGGAAG GCTACAATATGCTCGAGACAAGTTAATCGAAGTTTATTTTTGGGCTATTGGAACTATGTGGGAGCCTAAATTTTCACTGGCTAGATATACTTTTACCACT GTTACTATTCTTGATTCAGTGTATGACGATACCTATGATGCTTATGGCACTATAAAAGAGCTTGAGTTGTTCACTGCGGCCATTGAAAGATGGGATACTA TCATGAAAGGTGTCAACCATAAGATGAAAATGCTATTTGAGGCAACAGTTATGACGTATGACAAACTCAATATGATTACTTCAAATGAAGGACGATGCCA TCATTCTGAATATGGAAAGTTATCGCTTAAAAATATGGTCAAGTTATACCTGGAAGAGGCCAGATGGTTCGCTAAATCCTATGTGCCAACTTTAGACGAA TACAGAGGAACCTCTTCATTGAGCACTACTTACCAATCAATGGTTTTTGGCGTACTCTGTGGGCTGGGTGAATTAGGTTCGAGAGAAGTGTTTGATTGGT TATTTACTAACCCGAGCATTTTCCTAGCTTCTTCCGACCATTGTCGTCTCATGGATGACGTTGTATCTCACAAGTTTGAGCAGGAAAGAGGACATAGTGC TTCATCTGTGGAATGTTACATGACACACTATAAGGTGTCGAGGAATGAAGCAGTAAGTGCATTAAATGAAATCGTTGAAGAGGATTGGAAGATCGTCAAC GAGGAACTTCTGAACCCGTCAAACAGGAACATTCCTAAAGAAGTATTATCATTGTTCCTAGGGTATGAGCAGGTGATGGAAGTACTGTACAAGTACTCGG ATGGCTACACACACTCTAACACTTGGACCAAGGATATGCTCACTGCTCTGCTCGTCACTCCTCTTCGCATTAACTAG
AA sequence Show only first row Show all	>Lus10042202 pacid=23153818 polypeptide=Lus10042202 locus=Lus10042202.g ID=Lus10042202.BGIv1.0 annot-version=v1.0 MESSNCTEDDVHRPTAKFHPSPWGDFFITHVFHSHQVVRDWNERIEALTPEVAMMLLAPQQGLWEKLNLVDVIQRLGIGYHFKEEIQRLLQQVYSDHCST ITVDHHDHDLCTISLCFRQLRQHGYDVSTGIYIQEVHDRRRKVPERISRGHGRNVKLVRSWIHESVLDEAIEFTKSHLNSAILLMETTELDSSVLADRIS HALERPLRKGVAKVEQLFFISVYEQMHGHDETLLTLAKLSFNVLQNMYQNELKVLTKWWIDLDLIGRLQYARDKLIEVYFWAIGTMWEPKFSLARYTFTT VTILDSVYDDTYDAYGTIKELELFTAAIERWDTIMKGVNHKMKMLFEATVMTYDKLNMITSNEGRCHHSEYGKLSLKNMVKLYLEEARWFAKSYVPTLDE YRGTSSLSTTYQSMVFGVLCGLGELGSREVFDWLFTNPSIFLASSDHCRLMDDVVSHKFEQERGHSASSVECYMTHYKVSRNEAVSALNEIVEEDWKIVN EELLNPSNRNIPKEVLSLFLGYEQVMEVLYKYSDGYTHSNTWTKDMLTALLVTPLRIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10042202 [exp]	0	1
					Lus10021782 [exp]	2.6	1.0000
					Lus10023587 [exp]	4.7	1.0000
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	5.7	1.0000
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Lus10027855 [exp]	6.6	1.0000
AT3G19540			Protein of unknown function (D...		Lus10028040 [exp]	7.4	1.0000
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10031542 [exp]	8.1	1.0000
					Lus10007927 [exp]	8.8	1.0000
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10039026 [exp]	9.4	1.0000
AT5G45650			subtilase family protein (.1)		Lus10026062 [exp]	9.5	0.9977
AT2G34320			Polynucleotidyl transferase, r...		Lus10039942 [exp]	9.9	1.0000

Compare expression of checked genes

Lus10042202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.