Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23960 344 / 7e-112 ATTPS21 terpene synthase 21 (.1.2) AT3G14540 325 / 1e-103 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14520 322 / 7e-103 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14490 320 / 5e-102 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G31950 318 / 5e-101 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 317 / 2e-100 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 312 / 8e-99 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT5G44630 299 / 2e-94 AtTPS11 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G32030 296 / 8e-93 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G15870 285 / 1e-88 ATTS1 terpene synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008611 [exp] 907 / 0 AT5G23960 348 / 4e-113 terpene synthase 21 (.1.2) Lus10042202 [exp] 743 / 0 AT5G23960 302 / 8e-96 terpene synthase 21 (.1.2) Lus10008614 [exp] 726 / 0 AT5G23960 345 / 1e-112 terpene synthase 21 (.1.2) Lus10014724 [exp] 552 / 0 AT5G23960 314 / 2e-100 terpene synthase 21 (.1.2) Lus10002660 [exp] 551 / 0 AT3G14520 310 / 4e-98 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10040043 [exp] 536 / 0 AT5G23960 329 / 7e-106 terpene synthase 21 (.1.2) Lus10031590 [exp] 436 / 1e-147 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2) Lus10031589 [exp] 348 / 1e-112 AT5G23960 318 / 3e-101 terpene synthase 21 (.1.2) Lus10001110 [exp] 273 / 3e-84 AT3G25810 362 / 1e-118 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095500 [exp] 513 / 1e-177 AT5G23960 408 / 6e-137 terpene synthase 21 (.1.2) Potri.015G085500 [exp] 465 / 5e-159 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 456 / 2e-155 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.011G142800 [exp] 449 / 3e-152 AT5G23960 405 / 2e-135 terpene synthase 21 (.1.2) Potri.019G020367 [exp] 368 / 4e-121 AT5G23960 494 / 7e-171 terpene synthase 21 (.1.2) Potri.019G023004 [exp] 368 / 6e-121 AT5G23960 474 / 8e-163 terpene synthase 21 (.1.2) Potri.019G045100 [exp] 360 / 9e-118 AT5G23960 474 / 2e-162 terpene synthase 21 (.1.2) Potri.019G016700 [exp] 355 / 3e-116 AT5G23960 482 / 6e-166 terpene synthase 21 (.1.2) Potri.019G016900 [exp] 355 / 3e-116 AT5G23960 474 / 6e-163 terpene synthase 21 (.1.2) Potri.019G016500 [exp] 347 / 2e-113 AT5G23960 463 / 6e-159 terpene synthase 21 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10042204 pacid=23153946 polypeptide=Lus10042204 locus=Lus10042204.g ID=Lus10042204.BGIv1.0 annot-version=v1.0 ATGGGGAGTGACGATGAAGCTATTCATCGCCGGAGAGCAAAGTTCCATCCTTCACCATGGGGCGACTTCTTCCTCACCCACCTCTTCCAATCCGATGAGG TGGTACAAGAGTGGAACGAAAGAATTGAAACTCTGAAACCTGACGTGGTGACCAAGTTGCTAGCTCCGACGTCGACGTCGACCGTGTTATGGGAGAAGTT GAAACTAGTGGATGCGGTTCAACGACTAGGGATCGGTTACCATTTCGAGGAAGAGATCCAACAACTCCTCGAACAAGTTTATGATAATATTATTATAATT AATGAACATCACGATGATCTGGAGACCGTTTCACTCTATTTTAGATTGCTCAGACAACATGGCTTCGATGTGCCCTCTGATATATTCAAGAGATTCAAGG GTGAGGATGGAGGGTTCAAGGAAGAATTAGCGAATGACGTTGAAGGAATGTTAAGCTTATACGAAGCTGGATACATGAGGAAGCAAGGAGAAGATATACT GGACGAAGCAATCCACTTCACAAAATCACACCTCAATGCTGCAGTAATACTACTAATGGATACAGAATTATTAGACTCTTCATCTCAAGTACCATTGGCT AAACGAATCAGCCATGCATTGGAATGGCCACTTCGTAAAGGAGTGCCCAAGGTTGAGCAACTCTTCTTCATCTCTGTTTATGAGCAAATGGACGGCCACG ATGAAACCCTGCTAACCTTGGCCAAGCTAAGTTTCAATGTGCTTCAGAACATGTACCAAAAGGAGCTCAAAGCCCTTACCAAGTGGTGGAATGAGTTTGA TTTGATAAGGAGGCTCAAATATGCACGAGACAAGCTAATTGAGGTTTACTTTTGGACTATTGGATGCCTGTGGGAGCCCAAATTCTCCGTGGCTAGATAC ACTTTTACGACTATTACGCTTTTTGGTTCCTTGTTCGACGACACCTATGATGCTTACGGCACCATCCAAGAGCTTGAGCTCTTCACTGCCGCCGTCCAAA GATGGGATACCAGCATGAAAGGTGTTAACAAAAAAATGAAGATCCTTTTCGAGGCGACGGATACTCTCTGCAACGAACTCGGCTCGATTAATTCCAAAGA CGGGCGACCCTACTGTTTGGAATATGTCCGGTTAGCGACTAAGAAGATGGTGAGTTTATACTTGGAAGAAGCCAGATGGTTCGCCAATTCACATGTGCCA ACCTTAGATGAATATAGACAAGTCTCTTCATTGACCACTGTTTATCAAGGGATGGTTTGTGCCGCAGTCTGCGGGCTGGGTGAACTGGCTACTAAACAAG TGTTCGATTGGATATTCACTGATCCCAAAATTCTAGTGTCTTTTTCCGATCATTGTCGTCTCATGGATGACATTGTATCTCACAAGTTCGAGCAAGAAAG AGGGCATGCTGCTTCATCGGTAGAATGTTACATGACGCATTACGGGGTGTCGAGGGAGGAAGCAGTGGATGCGTTAAACAAAATGGTGGAGGAGGACTGG AAGATCGTGAACGGGGAATTGCTGAACCGGGCTAATGCCTGGATCCCAAAGGAAGTGCTGTCGTTGTTCCTTGCGTTTGAGCAGGTGATGAATAAGTTGT ACAAGTACTCCGATGGCTACACACACTCTAATGGTTGGACCGTGGATATGCTCACTTCTTTGCTCGTCACTCCTCTTCCCATTAATTAA
AA sequence Show only first row Show all	>Lus10042204 pacid=23153946 polypeptide=Lus10042204 locus=Lus10042204.g ID=Lus10042204.BGIv1.0 annot-version=v1.0 MGSDDEAIHRRRAKFHPSPWGDFFLTHLFQSDEVVQEWNERIETLKPDVVTKLLAPTSTSTVLWEKLKLVDAVQRLGIGYHFEEEIQQLLEQVYDNIIII NEHHDDLETVSLYFRLLRQHGFDVPSDIFKRFKGEDGGFKEELANDVEGMLSLYEAGYMRKQGEDILDEAIHFTKSHLNAAVILLMDTELLDSSSQVPLA KRISHALEWPLRKGVPKVEQLFFISVYEQMDGHDETLLTLAKLSFNVLQNMYQKELKALTKWWNEFDLIRRLKYARDKLIEVYFWTIGCLWEPKFSVARY TFTTITLFGSLFDDTYDAYGTIQELELFTAAVQRWDTSMKGVNKKMKILFEATDTLCNELGSINSKDGRPYCLEYVRLATKKMVSLYLEEARWFANSHVP TLDEYRQVSSLTTVYQGMVCAAVCGLGELATKQVFDWIFTDPKILVSFSDHCRLMDDIVSHKFEQERGHAASSVECYMTHYGVSREEAVDALNKMVEEDW KIVNGELLNRANAWIPKEVLSLFLAFEQVMNKLYKYSDGYTHSNGWTVDMLTSLLVTPLPIN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10042204 [exp]	0	1
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10007832 [exp]	1.0	0.7998
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10023633 [exp]	14.1	0.7355
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	15.3	0.7533
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10014876 [exp]	19.4	0.7330
					Lus10037868 [exp]	20.2	0.7174
AT3G09110			Protein of unknown function (D...		Lus10003166 [exp]	21.6	0.7702
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001432 [exp]	23.0	0.6992
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10006444 [exp]	24.0	0.7158
AT1G07175			unknown protein		Lus10018252 [exp]	24.4	0.6761
AT5G10695			unknown protein		Lus10042440 [exp]	26.7	0.7117

Compare expression of checked genes

Lus10042204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.