Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35380 608 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G16760 602 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 546 / 0 protein kinase family protein (.1) AT2G24370 520 / 3e-174 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G31230 489 / 8e-163 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G12000 481 / 3e-160 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G07020 468 / 3e-155 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 466 / 8e-155 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT3G20200 435 / 2e-141 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G17540 402 / 2e-129 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008609 [exp] 919 / 0 AT1G16760 417 / 3e-137 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024212 [exp] 805 / 0 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10009896 [exp] 733 / 0 AT2G24370 632 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040573 [exp] 650 / 0 AT2G24370 815 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026989 [exp] 635 / 0 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10021596 [exp] 536 / 1e-180 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020185 [exp] 526 / 6e-180 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027593 [exp] 516 / 2e-176 AT2G24370 665 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008542 [exp] 513 / 9e-172 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078500 [exp] 630 / 0 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G002400 [exp] 628 / 0 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G001900 [exp] 604 / 0 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.006G225300 [exp] 550 / 0 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G061600 [exp] 480 / 4e-159 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G198300 [exp] 445 / 9e-145 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.014G001700 [exp] 436 / 2e-141 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170742 [exp] 385 / 4e-122 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.006G147000 [exp] 328 / 2e-101 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.004G233000 [exp] 314 / 5e-95 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10042205 pacid=23153605 polypeptide=Lus10042205 locus=Lus10042205.g ID=Lus10042205.BGIv1.0 annot-version=v1.0 ATGGCAACGGCCACCATCAGGAGGTATTCCGGGGACAAGAAGAGTGAGCAATTGGTGGTGGTCGCCGTCGACAAGGACAAAGGCAGCCAAAACGCCTTAA AATGGACTGTCGAGCATTTGGTTTCCAGAGGCGAGACCCTCATTCTTCTCCATGTCAAACAAAAGCCGCTCGGACCCGGCGGAGGACTCCCTAATGCCCA CTTTGATCCGGACGACGGTTTCGGCGGTGATAAAATTCAGCCATTGGATGCCCAAACGAAAGAGCTTTTACTTCCGTTCCGATGCTACTGCTCCCGCAAA GAGATAAAAACAATAGAAGCAGTGGTGGAAGAGACCGATATAGCGAAAGGAATCATCCATTACTGCGTAGCAAATGCGGTGGAGGCGCTTGTACTCGGAA CGCCGTATCGCGGCGGCTTTGTCAAGTCTGTTTCTTCATTTCCGCCATTAATGTTCCCCTTTCTCTCTATTCACGAATCGCTTGAACACAATTGCAGAAG ATTCAAGACGACGGATGTCCCCACCACCGTTATGAAAGGAATCCCCGACTACTGCAACGTGTACGTCATCAGCAAAGGCAAGATCTCAACCATCCGAAAC GCCTCCGCTCCTGCTCCTTCCCGCCCAATATCCAACATCGCCAGGAGCTCCTCCGATTCCGATCAGATCACTGAAGTACTACCCAAAAACAAGTCTCGGA GAGGTTCTCCAGAGATCGCAGATTACTCACCACCTCGGACGTCATCGGCGAGAAGCAGCAGAGCTCCGAGCATAACGGACACGGATATTTCTTTCGTGAG CGTCAGCAGCAGCGCTGCTGCTGGTGGCGCCGGGGGCGCCGGGTATGGAAGGATGAGCGCCGATCGAATCATTTTCCCATCCTACGACAATAGCGAATTC GGCGATATGCGTCTCTCCAACTGCGACACGATGAGCGTGGCGTCTTCTTACTCGGGAGGTGGTGGTACGACGCCTCTTGAGTATTTCGGTGGCGGCTACA GTGATTTCTCTTCGACCTCTGATATTGATGGCCCTAGGCTTTCCTCTGCTTCCCAAGGCATCGAATTGTTGGTTTGTGTCGCCAAACAGGAAGATCCAGA GTCGGAGGTGAGAAGGCTAAGGCTGGAGCTGAAACAAACAATGGAGATGTACAATAACGCTTGTAAAGAAGCTCTTACTGCAAAAACTAAGGCGATGGAG CTACAGAGATGGAAAGTCGAGAAGCAACAGAGGGTAGAGATGTCCAAAACGGCAGAGGAAGTTGCATTAGCAGCAGCAGAGGAAGAGAAAGCCAAACGCA GGACAGCCATGGAAGCAGCCAAATACGCTAAGATGATCGCCGAAAAGGAAGCTCGGAAGAGAAGAAGCATGATAACAACGTCGGATAGCAGTAGCACCAC CGAGTCAGAAGAATGGAAACAGAACGACAATAAGGAACTCCGCTGCCGTCAGTACACAATCGACGAGATCAAACAAGCCACCAACGACTTCTCCGCTTCG CTCAAAATCGGCGAGGGAGGATACGGCCCAGTCTACCGCTGCAACCTCGACCACACTGCGGTAGCAATCAAGTCCCTCCGCCCTGATGCTGCTCAAGGAA AAGCTCAATTCCAGCAAGAGGTCGATGTGCTGTCACGAATCCGCCATCCAAACATGGTCCTATTGATGGGAGCTTGCCCCGAGCAAGGCTGTTTAGTCTA CGAGTACATGGCCAACGGAAGCTTAGACGACCGCCTCTCAAGGAGAGGCAACACTCCGCCGCTATCCTGGCAGCTGAGGTTCAGAATCGCGGCGGAGATA GCCACGGGGCTGCACTTCCTCCACCAGACGAAACCGGAGCCGCTAGTCCATCGAGATCTGAAGCCAGGGAACATACTGCTGGATCGGAACTATGTGAGCA AGATCAGCGACGTCGGACTCGCGAGGCTGGTGCCGCCGTCGGTCGCCGACAGTATTACGCAGTACCGGATGACTCAGACCGCCGGGACTTTCTGCTACAT CGATCCGGAGTATCAGCAGACCGGAATGCTGGGGACCAAATCGGACATCTACTCGCTAGGAATCATTCTCTTACAACTGCTCACAGCCAAGCCTCCTATG GGGCTTACTCACCACGTGTCTAGGGCGATCAAGAAAGGGGAGTTCCCCAGCGTGTTGGATCCCGATGTTCCCGATTGGCCTTTGGAGGAGGCACTGCTTT TGGCGAAATTAGCGATTCGGTGTGCGGAGCTGAGGAAGAAGGATAGGCCGGATCTGAACGACGTCGTGTTGCCGGTAGTATGA
AA sequence Show only first row Show all	>Lus10042205 pacid=23153605 polypeptide=Lus10042205 locus=Lus10042205.g ID=Lus10042205.BGIv1.0 annot-version=v1.0 MATATIRRYSGDKKSEQLVVVAVDKDKGSQNALKWTVEHLVSRGETLILLHVKQKPLGPGGGLPNAHFDPDDGFGGDKIQPLDAQTKELLLPFRCYCSRK EIKTIEAVVEETDIAKGIIHYCVANAVEALVLGTPYRGGFVKSVSSFPPLMFPFLSIHESLEHNCRRFKTTDVPTTVMKGIPDYCNVYVISKGKISTIRN ASAPAPSRPISNIARSSSDSDQITEVLPKNKSRRGSPEIADYSPPRTSSARSSRAPSITDTDISFVSVSSSAAAGGAGGAGYGRMSADRIIFPSYDNSEF GDMRLSNCDTMSVASSYSGGGGTTPLEYFGGGYSDFSSTSDIDGPRLSSASQGIELLVCVAKQEDPESEVRRLRLELKQTMEMYNNACKEALTAKTKAME LQRWKVEKQQRVEMSKTAEEVALAAAEEEKAKRRTAMEAAKYAKMIAEKEARKRRSMITTSDSSSTTESEEWKQNDNKELRCRQYTIDEIKQATNDFSAS LKIGEGGYGPVYRCNLDHTAVAIKSLRPDAAQGKAQFQQEVDVLSRIRHPNMVLLMGACPEQGCLVYEYMANGSLDDRLSRRGNTPPLSWQLRFRIAAEI ATGLHFLHQTKPEPLVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADSITQYRMTQTAGTFCYIDPEYQQTGMLGTKSDIYSLGIILLQLLTAKPPM GLTHHVSRAIKKGEFPSVLDPDVPDWPLEEALLLAKLAIRCAELRKKDRPDLNDVVLPVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16760			Protein kinase protein with ad...		Lus10042205 [exp]	0	1
AT5G26749			C2H2 and C2HC zinc fingers sup...		Lus10031439 [exp]	3.3	0.8882
AT1G05675			UDP-Glycosyltransferase superf...		Lus10039041 [exp]	4.2	0.8395
AT1G19980			cytomatrix protein-related (.1...		Lus10021095 [exp]	15.5	0.8633
AT5G67090			Subtilisin-like serine endopep...		Lus10024815 [exp]	15.8	0.8773
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10018686 [exp]	17.5	0.8436
AT5G15240			Transmembrane amino acid trans...		Lus10005239 [exp]	20.3	0.8138
AT5G04910			unknown protein		Lus10028878 [exp]	21.9	0.8475
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042904 [exp]	26.9	0.8659
AT2G27285			Coiled-coil domain-containing ...		Lus10038787 [exp]	27.3	0.8191
AT4G16800			ATP-dependent caseinolytic (Cl...		Lus10000420 [exp]	27.8	0.8297

Compare expression of checked genes

Lus10042205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.