Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31930 54 / 2e-07 XLG3 extra-large GTP-binding protein 3 (.1.2.3) AT4G34390 47 / 2e-05 XLG2 extra-large GTP-binding protein 2 (.1) AT2G23460 46 / 4e-05 ATXLG1, XLG1 extra-large G-protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008608 [exp] 625 / 0 AT1G31930 50 / 2e-06 extra-large GTP-binding protein 3 (.1.2.3) Lus10009897 [exp] 264 / 1e-85 AT4G34390 52 / 3e-07 extra-large GTP-binding protein 2 (.1) Lus10024210 [exp] 261 / 1e-84 AT1G31930 52 / 2e-07 extra-large GTP-binding protein 3 (.1.2.3) Lus10010421 [exp] 60 / 2e-09 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10012124 [exp] 59 / 4e-09 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10023838 [exp] 52 / 8e-07 AT2G23460 836 / 0.0 extra-large G-protein 1 (.1) Lus10021012 [exp] 50 / 2e-06 AT2G23460 769 / 0.0 extra-large G-protein 1 (.1) Lus10019655 [exp] 46 / 6e-05 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G130200 [exp] 230 / 4e-72 AT1G31930 50 / 1e-06 extra-large GTP-binding protein 3 (.1.2.3) Potri.013G157100 [exp] 229 / 7e-72 AT1G31930 51 / 8e-07 extra-large GTP-binding protein 3 (.1.2.3) Potri.001G135300 [exp] 58 / 1e-08 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 57 / 3e-08 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.009G109400 [exp] 53 / 4e-07 AT2G23460 807 / 0.0 extra-large G-protein 1 (.1) Potri.004G148300 [exp] 50 / 4e-06 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1) Potri.012G042500 [exp] 46 / 6e-05 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.007G035200 [exp] 45 / 6e-05 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.015G031100 [exp] 45 / 8e-05 AT1G31930 961 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.005G131200 [exp] 45 / 0.0001 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042206 pacid=23153685 polypeptide=Lus10042206 locus=Lus10042206.g ID=Lus10042206.BGIv1.0 annot-version=v1.0 ATGGCGAGGATGGAGCTCGAAGAGCTCTACTCGGGCATCGCTGATGAATTGGTAAACCTGACCTTTCAAGACATGGCTAAGGTTGAACAACATGAGTCGA TGGACAAAAAGAGTCACGAGCCGGACAGGATTTCATCTCTCGATTTCAACCGAGGCTTGGAAGCGACCTGTGTAGTCGAAGGCCAAACTGTAATGACGGA GGACGGCCACGATACTAGCGGCTGTGATATGCAGGGCGGCTCCACGGTTGCAGTGGAGTCGTCCCTAAGGATGGGAGAGGGCACGATTAGAACGGTGGCA ATGGCGAGAATGGAGCTGGAGGAGCTCTACTCGGGCATCCCTGATGAGTCTGTCAACCTGACCTTCCAAGATATGGCTCAGGTTGAACATCACGAGAAAT CCAACTCGATTGACACGAGTTCTAGGCGTAAAGAGCTGGCAAGAATTTCATCCCTCGATTTCAACCGAGGCTTGGAAGCTACCCGGGTAGTCGAAGGCCA GACGGCAATGGCAAAGGACGGCCACAATACTAGCGGCCGAAAAATGCAGGGCGGCTCCACGGTACCAGTGGAGTCGCCCAACCGCTTGGACTACAACGTT GTCATAATGACAACGGAGGATGTGTCATACGAGAGCGTGATAAGCACTAGGCAGAGTTCAAGTGGTCCATTGGGCTCTCCCGCCCCCAACCACAGGGTTT CTGGGTCCGATCGTTACCAGACACCGTCCTCGTCTACTCGTCATCATTACCGCCCTCTGAGCGGCGGGTCTACACCGCGGTCGACCTACAGTGCTAGTTA CGAAGCGAGTCCGACCAGCGTGGGTACTTACGGGACACCGGTGTATGACATGGTGGTGGATAAAGGACGTAGACAAGGCATCCCTCATTCCAATATTTGT ACCATTTGCTCAACTTCCATCTATTTCTTTAAGAACCGGTGTCTGGTTTGTGGAAGAGTGTACTGCAAGAAATGTGTGGAATTGGGGATGGGGAATATGC ACGAAGGAAGGAAATGCACCGAATGTGTAGGCAGAAGATTTAGTGCAAGGTACATAAGAAAAGCAGGAAAGGTGGGGTGCTTATCTCGTTATCCAGTGAC GGTGAAGCAGGCAGAGCTGAAATGGGCGGAGAAAGGACCGAGGAAGAACGGTGAGCGTGCATACGGCCAGCAGGTTCACCGCCTTAACCATGGGTCTACT ACACCCAGGATGAAGCCCCTATTAATGTTCTCCAGGAACCCAGCGCCTTCGTATCCTGCTGGCTCGGTTTATTCTCCCTATACACCAACTCACCACCGTC TCCCGCTATAG
AA sequence Show only first row Show all	>Lus10042206 pacid=23153685 polypeptide=Lus10042206 locus=Lus10042206.g ID=Lus10042206.BGIv1.0 annot-version=v1.0 MARMELEELYSGIADELVNLTFQDMAKVEQHESMDKKSHEPDRISSLDFNRGLEATCVVEGQTVMTEDGHDTSGCDMQGGSTVAVESSLRMGEGTIRTVA MARMELEELYSGIPDESVNLTFQDMAQVEHHEKSNSIDTSSRRKELARISSLDFNRGLEATRVVEGQTAMAKDGHNTSGRKMQGGSTVPVESPNRLDYNV VIMTTEDVSYESVISTRQSSSGPLGSPAPNHRVSGSDRYQTPSSSTRHHYRPLSGGSTPRSTYSASYEASPTSVGTYGTPVYDMVVDKGRRQGIPHSNIC TICSTSIYFFKNRCLVCGRVYCKKCVELGMGNMHEGRKCTECVGRRFSARYIRKAGKVGCLSRYPVTVKQAELKWAEKGPRKNGERAYGQQVHRLNHGST TPRMKPLLMFSRNPAPSYPAGSVYSPYTPTHHRLPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31930		XLG3	extra-large GTP-binding protei...		Lus10042206 [exp]	0	1
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10041614 [exp]	4.0	0.7014
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10000190 [exp]	24.7	0.6157
					Lus10025954 [exp]	31.5	0.6010
AT3G49700		AtACS9, ACS9, E...	ETHYLENE OVERPRODUCING 3, 1-am...		Lus10007714 [exp]	40.5	0.6421
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10037728 [exp]	42.0	0.6144
					Lus10024618 [exp]	64.7	0.5687
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10017707 [exp]	72.6	0.6065
AT3G11590			unknown protein		Lus10005200 [exp]	76.9	0.5906
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10028217 [exp]	89.5	0.5617
AT1G63990		SPO11-2	sporulation 11-2 (.1)		Lus10024675 [exp]	93.7	0.5462

Compare expression of checked genes

Lus10042206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.