Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53600 387 / 2e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 238 / 1e-71 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74630 230 / 6e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G56690 231 / 2e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G16835 227 / 2e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 225 / 2e-67 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G29230 223 / 3e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G06140 209 / 1e-62 MEF3 mitochondrial editing factor 3, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 215 / 2e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18840 209 / 2e-62 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008607 [exp] 409 / 4e-141 AT1G53600 498 / 6e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016511 [exp] 225 / 1e-68 AT5G59600 577 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024222 [exp] 223 / 9e-68 AT1G74630 719 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012971 [exp] 225 / 2e-67 AT1G68930 487 / 5e-163 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10019797 [exp] 221 / 1e-66 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000597 [exp] 214 / 5e-66 AT4G16835 545 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 219 / 2e-65 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013540 [exp] 221 / 3e-65 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039974 [exp] 216 / 4e-65 AT1G06150 612 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G006400 [exp] 238 / 3e-72 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 238 / 5e-72 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G005400 [exp] 237 / 7e-72 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G258766 [exp] 229 / 3e-70 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G243800 [exp] 229 / 3e-70 AT5G59600 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G085800 [exp] 232 / 5e-70 AT4G02750 491 / 3e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G035900 [exp] 231 / 5e-70 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G125500 [exp] 229 / 6e-70 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 233 / 7e-70 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 229 / 3e-69 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10042207 pacid=23153945 polypeptide=Lus10042207 locus=Lus10042207.g ID=Lus10042207.BGIv1.0 annot-version=v1.0 ATGAGGGAGGAAGGAGTTGTCGACACTAATCCAAATATCACAACGGTAATGTTTGAAGCTTGTAGTAATTTCGGAGCACTTAGAGAAGGAATACAGATGC ATGGTTTGGTCCTGCGCCTTGGATTTGCATTGGATGTATTTTTAGGAAATTCTGTTATTACAATGTACTGCAGATGTGGTTGCATGAATGAAGCAAACAA AGTATTTCAATCGATCGAGAAGAAAGATATTGTTTCCTGGAATTCGTTGATTGCTGGTTATATTCAACATGATGAAATTGAGAAAGCTTATGAGCTCTTT GAGGTGATGCCACAAAGAGATTCCTTTTCATGGACGTCCATAATCTCAGGATATCTTGGTAAGGGAAGAGTAGAAAGATCTATCCAGTTGTTCAAAATGA TGCCTGTGAAAGATGATGTCGCTTGGACTGCTGTAATTTCAGGCTTTTTTGACAAGGAAATGTGTGGAGAGGCTTTTACTTGGTTTATTGATATGCTAAG GGATTCAGTTTTGCCAAAATCGATTACTCTAAGTAGCATGCTAAGTGCTTCAGCTTGCTTAGCAACACTAAGAGCAGGGATGCAGATCCACAGTCTTGCG GTGAAAAGTAGTCTGGAATATGATTTGTTCATTCAGAATTCATTGGTTTCAATTGTACCTAACATTGTCTCCTTTAACTCAATGATCACTGGATTTGCAC AAAATGGGTTTGGGGAAGAAGCTCTTAAACTGTTTACAAAAATGCAGGCTGAAGAGTGGAAGCCAAATGAGGTTACCTTACTTGCAGTGCTGTCAGCTTG TGCGCACGAAGGACTAGTGCGACAAGGATGTGAATATTTTAGTTCTATGAAATCATTGTATGGCATTGAACCAGGTCCCGATCATTATGCATGCATGGTT GATCTCCTTGGTAGAGCAGGATTATTGGATGAAGCTACAGATTTAATCCAGTCTAACGGTATTAAACCCCATTCTGGGATTTGGGGTGCTGTTCTTGCAG CAAGTATGAATCATAGCCGTCTTGACCTTGCAAATGTTGCAGCAAAACACCTTACTGACTTGGAGCCCACTGATGCAACTCCTTATTGA
AA sequence Show only first row Show all	>Lus10042207 pacid=23153945 polypeptide=Lus10042207 locus=Lus10042207.g ID=Lus10042207.BGIv1.0 annot-version=v1.0 MREEGVVDTNPNITTVMFEACSNFGALREGIQMHGLVLRLGFALDVFLGNSVITMYCRCGCMNEANKVFQSIEKKDIVSWNSLIAGYIQHDEIEKAYELF EVMPQRDSFSWTSIISGYLGKGRVERSIQLFKMMPVKDDVAWTAVISGFFDKEMCGEAFTWFIDMLRDSVLPKSITLSSMLSASACLATLRAGMQIHSLA VKSSLEYDLFIQNSLVSIVPNIVSFNSMITGFAQNGFGEEALKLFTKMQAEEWKPNEVTLLAVLSACAHEGLVRQGCEYFSSMKSLYGIEPGPDHYACMV DLLGRAGLLDEATDLIQSNGIKPHSGIWGAVLAASMNHSRLDLANVAAKHLTDLEPTDATPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53600			Tetratricopeptide repeat (TPR)...		Lus10042207 [exp]	0	1
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	10.4	0.8596
AT1G13770		RUS3	ROOT UV-B SENSITIVE 3, Protein...		Lus10037076 [exp]	13.0	0.8517
AT1G13030			sphere organelles protein-rela...		Lus10006465 [exp]	16.7	0.8155
AT4G03115			Mitochondrial substrate carrie...		Lus10024769 [exp]	17.3	0.8591
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007387 [exp]	22.8	0.8520
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Lus10029004 [exp]	23.5	0.8409
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Lus10000493 [exp]	27.8	0.8443
AT3G05675			BTB/POZ domain-containing prot...		Lus10013580 [exp]	29.4	0.8418
AT4G39370		UBP27	ubiquitin-specific protease 27...		Lus10020843 [exp]	30.4	0.8247
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Lus10025018 [exp]	32.0	0.8111

Compare expression of checked genes

Lus10042207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.