Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53600 140 / 5e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G35030 89 / 3e-21 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 86 / 4e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G32415 82 / 9e-19 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G09410 81 / 3e-18 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G56690 81 / 4e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G29230 80 / 8e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G16835 77 / 4e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62260 76 / 2e-16 MEF9 mitochondrial editing factor 9 (.1) AT2G45350 73 / 1e-15 CRR4 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008607 [exp] 316 / 7e-108 AT1G53600 498 / 6e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013149 [exp] 94 / 9e-23 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013540 [exp] 89 / 8e-21 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030549 [exp] 86 / 4e-20 AT4G02750 468 / 2e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012897 [exp] 86 / 4e-20 AT4G02750 469 / 4e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017297 [exp] 83 / 9e-20 AT4G02750 255 / 4e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012514 [exp] 84 / 2e-19 AT1G62260 689 / 0.0 mitochondrial editing factor 9 (.1) Lus10019797 [exp] 83 / 7e-19 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027455 [exp] 81 / 4e-18 AT3G29230 324 / 4e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048800 [exp] 96 / 2e-23 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G019900 [exp] 94 / 6e-23 AT4G02750 542 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G005400 [exp] 93 / 2e-22 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G006400 [exp] 93 / 2e-22 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G139200 [exp] 88 / 7e-21 AT1G62260 749 / 0.0 mitochondrial editing factor 9 (.1) Potri.016G038400 [exp] 88 / 1e-20 AT2G35030 701 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G087300 [exp] 85 / 1e-19 AT1G32415 851 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.017G086100 [exp] 78 / 2e-17 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G125500 [exp] 77 / 6e-17 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G116100 [exp] 77 / 8e-17 AT4G22760 669 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10042208 pacid=23154030 polypeptide=Lus10042208 locus=Lus10042208.g ID=Lus10042208.BGIv1.0 annot-version=v1.0 ATGAAAGGGCTTGCTGTTCTCCCTCGCCACGTTTCCTTGTTGAAATGTTCAGTCTTCAGACGTTACTACTCGAAACCGGTTCAGAGGCGTGAACCCTATG ACAAGTTAGTGGTTCACTGCAATTCCCAGATCACCAAGCATGGGAGAGAGGGCAGCATTCAGAATTCCGAGGAGATCTTCAGACGAATGTCTAGCAAGAC CACTGTTTCTTACACTGCTATGCTCACCGCGTACTCTCAGAACAGCCAGTTCGCAAAGGCACGGAAGGTAATCGACAAGATGCCCTGCAGAACTACTGCT TCCTACAATGCAATGATCACAGCCTATGTGAGAAATGGTTGTAAGGTGAACGAGGGCTTCAGTTTGTTTTCGCAGATGGATGAACGGAACGAGGTTACTT TTGGTACCATGATCACAGGGTTCGTTAGGGTTGGGATGTTTGAAAGGGCTTGGGAGTTGTATGGGCAGATGCCCGGCTGA
AA sequence Show only first row Show all	>Lus10042208 pacid=23154030 polypeptide=Lus10042208 locus=Lus10042208.g ID=Lus10042208.BGIv1.0 annot-version=v1.0 MKGLAVLPRHVSLLKCSVFRRYYSKPVQRREPYDKLVVHCNSQITKHGREGSIQNSEEIFRRMSSKTTVSYTAMLTAYSQNSQFAKARKVIDKMPCRTTA SYNAMITAYVRNGCKVNEGFSLFSQMDERNEVTFGTMITGFVRVGMFERAWELYGQMPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53600			Tetratricopeptide repeat (TPR)...		Lus10042208 [exp]	0	1
AT4G37560			Acetamidase/Formamidase family...		Lus10011529 [exp]	8.4	0.8110
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Lus10030591 [exp]	22.8	0.7434
AT5G36930			Disease resistance protein (TI...		Lus10023487 [exp]	32.0	0.7734
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10001377 [exp]	38.2	0.7509
AT1G09660			RNA-binding KH domain-containi...		Lus10035768 [exp]	45.8	0.7512
AT3G14205			Phosphoinositide phosphatase f...		Lus10037446 [exp]	48.8	0.7549
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Lus10024243 [exp]	57.2	0.7239
AT5G43710			Glycosyl hydrolase family 47 p...		Lus10041170 [exp]	65.2	0.7442
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10008650 [exp]	82.0	0.7286
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10034413 [exp]	103.6	0.6674

Compare expression of checked genes

Lus10042208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.