Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17680 684 / 0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) AT3G04240 57 / 4e-08 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11540 52 / 2e-06 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G76630 49 / 1e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021336 [exp] 57 / 9e-08 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017009 [exp] 57 / 1e-07 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10010627 [exp] 53 / 1e-06 AT2G32450 1148 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10033182 [exp] 53 / 1e-06 AT2G32450 1323 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10003576 [exp] 47 / 7e-05 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G128900 [exp] 1066 / 0 AT1G17680 711 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.013G129500 [exp] 344 / 9e-101 AT5G09950 1001 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 61 / 4e-09 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G025600 [exp] 59 / 2e-08 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G208900 [exp] 58 / 3e-08 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G075700 [exp] 57 / 6e-08 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G027900 [exp] 53 / 1e-06 AT1G05150 1226 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.005G234900 [exp] 50 / 8e-06 AT1G05150 1239 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.001G473100 [exp] 47 / 9e-05 AT5G56290 978 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.006G143300 [exp] 44 / 0.0005 AT2G06210 1507 / 0.0 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10042212 pacid=23153975 polypeptide=Lus10042212 locus=Lus10042212.g ID=Lus10042212.BGIv1.0 annot-version=v1.0 ATGGGGAGTCCCGGTCCCGTAGACGAAGGAATGGAATTTGAATTGGATAAAATGTTGGAATTGGCGTGGGATGCCTCTGAAGAAGAAGAGGATGATGAAG GGGATGAAGAAGAAGATGACGAAGAAGAAGGTGGAGAAGCAGATGAAAATGAAGTTGACAGGGAGGAGGTTGAGGTAGTTCAAGGAGCAGACTCCAATCT GTTGGTTTCGGTGGAAGGTCAGTGTTCGGAAATGGAATCTGTTCAGGATTTTGGATCCCTTGCATATGAAGCTCTTGCGGAGAAGAAGCGACGTGCACTT TCTGTTTCTAAAGGTGAAGGGTCAACAAAGAAGGCTAGGCTCGATGATACTTCAGGGGCTACCTTTGAAGAGATGATGGAGGCAATGGCTTACGGTATGC GGAAGAGAAGGTCGCGTAAGCGCAAGAGGAATGGTAGGCGTAAGGGATCCAAAAACAAGCGAAGGCCAGAAATTACAAGGATGCTTGGTGATGCTACTGT TCATTATGTACATTGCAAATATGAAGAGGCCATATCTGTTCTGAACGAGGTTGTTAGGCTGGCACCAGATGTACCTGAATCATACCATACACTTGGGCTT ATTTATGATGCACTTGGAAATTCTGAGAAGGCGATGGGATGTTATGCATTCGCAGCACGGCTCAAGCCGAAAGAATATTCCTATCTGTGGAAAGTGCTTT TTTCGTGGCACAAAGAGCAAGGAAAGTTAGCTCGTGCGATGATGTGCATTTGTAGAGCTGTACGGGCTGACCCCAGTGATATTTCGCTGAGGTCATCTCA TGCGTCTCTCTATTTGGAGCTTGGGGAGTATCAAAAAGCTGCTGAGACATATGAACAAATTTTACAAATTTGCCCAGATAATGTTGAAGTTCTGAAGAGA GCTGTTAAGCTGTACTTCATATGTGGTGAGACGGAGAGAAGTGTGAGCATTTTAGAGGAATATCTCAAGGATCATGTATCTGAAGCTGATTTTGCTGTAA TTGATATGCTTGCTGCTATACTGATGGAAAAAAGGGACCATGATGGTGCTCTCAAGCATATTGAGCATGCAAAAAAAGTTTACTATCTGGGAAAGGACCT GCCTTTGCCATTGAAAATCAAAGCAGGGATTTGCCATGCCCATCTTGGAGATATCGACAAAGCAGAGCTTTGCTTTTGCAGCTTGGAAAAGGAGAACGTT GGCGCTTGTTTGGAACTAATCACTGAAGTTGCTGATGCTTTCAGAAGTCTTGGCCATTTTCACTATGCGTTGAAGTATTATCATATGCTAGATGTAGATG GTGAACATGACAATGAGGGATCCATACATATCAAAATTGCTCAATGCCACTTATCCTTGAACAATAGAGCAGAGGCAGTGGCATATTTCTACAAAGCTTT GCCCAAGCTCTCAGACAGTGTTGATGTTAGATTGACTTTGGCTTCTCTGCTCCTTGAGGATGCTAAAGAAGATGATGCTATTTCCTTGCTCTCTCCTCCT GAAAATTCTTCTGAAGTTGATGTCGACCCAAACAAACCAAAGCCATGGTGGCTGGATGTGAAAATAAAAATGAAACTCTGCCACTTATATAGAGCCAAGG GAAAACTTGAGGGGTTTGTCAATACTTTGCTCCCTTTGGTTCGCGAGTCACTTTATGTCGAGAGTCTTCCACAGAAGAGGAAGAAAAGGCTGACGACAAG CATTCTTCGTAAAAGAATAAAAATTCTTGACGTTGGGGAAACCAATGATGTATTTGGTGGTGTCAGACCTCTCGCTTCTCGATCAGATCTGACGAAAGCT GCAAGAGCGAGAAGGATGCTGAAAGAGAGAGAAGAACTGAAAGCTGAAACAAAAGCTTCAGGGTATGATTGGAACAGCGATGATTCAGACGATGAGTCCA CGAAACAGGAAAAGAGAGCTCCTCCTCTGCCAAATTTACTGGAAGATGAAGAGCACCACAATCTCATTATTGATTTGTGCAAGGCATTACAATATTTGCA CCAGTATTGGGAAGCACTGGAGATAATCAGTCTGACCCGGAAATTGGGTTCAAACAAACTATCTCGTGAGAAGGACGTGGAGCTTCAATCTCTCGCTGCT CAGATATCATACAATACCACCGACCCGAAGCACTCTTTCGACCTCGTAAGATCGGTCGTTCAGCAACGGCCCTACAGTTATGCTGCATGGAACTGCTATC ACAAAATAACATCGAGATTAGGCACAATCTATTCAAAGCATTCAAAGTTTATGCGCTATTTGCGATCCAAGCACAGAGATTGTGTGCCTCCTATTGTAAT CAGCGGCCATCAGTTTACTGCTGTGAGTCACCATCAGGATGCAGCAAGAGAATACCTCGAAGCTTATAAACTACTGCCGGAGAATCCGCTTATCAATCTC TGTGCTGGTATAGTTCTAACCATTCTTTCCACTCCTCTTCTTGCTCTTTTCTACATCAGAACTTCCCTCACTCATCATATCTCTGTTCCAGGAAGTGCTC TGATCAACTTGACCCTCGGGTTCAGGCTTCAGAACAAGCATCAATGTGTGGCGCAAGGGTTATCCTTCCTCTACAACAATCTCCGACTTACTGAGAACAG TCAGGAGGCGCTGTATAATATCGCCCGGGCATATCAGCAAGTTGGAATGGTGACTCTGGCAGTTTCTTACTATGAGAAGGTGCTCTCCATGCCTGTCAAA GATTACCCGATTCCGAAGCTTCTGAACGAGAATGCAGAAGGTAACGATAAGCCCGAACCTGGCTATTGTGACCTGAGAAGAGAAGCGGCATACAATCTGC ATATGATATACATGAAAAGTGGAGCTGTTGATCTTGCTAGGCAGGTCCTTAGAAAGCATTGCGTTGTGTGA
AA sequence Show only first row Show all	>Lus10042212 pacid=23153975 polypeptide=Lus10042212 locus=Lus10042212.g ID=Lus10042212.BGIv1.0 annot-version=v1.0 MGSPGPVDEGMEFELDKMLELAWDASEEEEDDEGDEEEDDEEEGGEADENEVDREEVEVVQGADSNLLVSVEGQCSEMESVQDFGSLAYEALAEKKRRAL SVSKGEGSTKKARLDDTSGATFEEMMEAMAYGMRKRRSRKRKRNGRRKGSKNKRRPEITRMLGDATVHYVHCKYEEAISVLNEVVRLAPDVPESYHTLGL IYDALGNSEKAMGCYAFAARLKPKEYSYLWKVLFSWHKEQGKLARAMMCICRAVRADPSDISLRSSHASLYLELGEYQKAAETYEQILQICPDNVEVLKR AVKLYFICGETERSVSILEEYLKDHVSEADFAVIDMLAAILMEKRDHDGALKHIEHAKKVYYLGKDLPLPLKIKAGICHAHLGDIDKAELCFCSLEKENV GACLELITEVADAFRSLGHFHYALKYYHMLDVDGEHDNEGSIHIKIAQCHLSLNNRAEAVAYFYKALPKLSDSVDVRLTLASLLLEDAKEDDAISLLSPP ENSSEVDVDPNKPKPWWLDVKIKMKLCHLYRAKGKLEGFVNTLLPLVRESLYVESLPQKRKKRLTTSILRKRIKILDVGETNDVFGGVRPLASRSDLTKA ARARRMLKEREELKAETKASGYDWNSDDSDDESTKQEKRAPPLPNLLEDEEHHNLIIDLCKALQYLHQYWEALEIISLTRKLGSNKLSREKDVELQSLAA QISYNTTDPKHSFDLVRSVVQQRPYSYAAWNCYHKITSRLGTIYSKHSKFMRYLRSKHRDCVPPIVISGHQFTAVSHHQDAAREYLEAYKLLPENPLINL CAGIVLTILSTPLLALFYIRTSLTHHISVPGSALINLTLGFRLQNKHQCVAQGLSFLYNNLRLTENSQEALYNIARAYQQVGMVTLAVSYYEKVLSMPVK DYPIPKLLNENAEGNDKPEPGYCDLRREAAYNLHMIYMKSGAVDLARQVLRKHCVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17680			tetratricopeptide repeat (TPR)...		Lus10042212 [exp]	0	1
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	1.7	0.9035
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	2.0	0.8815
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10017845 [exp]	2.4	0.8541
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	3.9	0.8754
AT1G32810			RING/FYVE/PHD zinc finger supe...		Lus10017342 [exp]	5.5	0.8320
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013599 [exp]	7.5	0.8533
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10014045 [exp]	7.7	0.8661
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10013293 [exp]	7.7	0.8482
AT1G73400			Pentatricopeptide repeat (PPR)...		Lus10019141 [exp]	7.9	0.8124
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10035640 [exp]	8.1	0.8463

Compare expression of checked genes

Lus10042212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.