Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40610 340 / 4e-119 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT1G26770 331 / 2e-115 ATHEXPALPHA1.1, AT-EXP10, ATEXP10, ATEXPA10 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) AT1G69530 330 / 5e-115 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT2G03090 326 / 2e-113 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT5G05290 319 / 9e-111 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G39700 307 / 7e-106 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT5G56320 305 / 3e-105 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT3G55500 302 / 7e-104 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT2G37640 300 / 5e-103 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT5G02260 299 / 7e-103 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008603 [exp] 426 / 7e-153 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10009917 [exp] 358 / 7e-126 AT2G40610 395 / 9e-141 expansin A8 (.1) Lus10034227 [exp] 341 / 2e-119 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10036763 [exp] 318 / 2e-110 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10029038 [exp] 318 / 2e-110 AT2G40610 418 / 6e-150 expansin A8 (.1) Lus10026614 [exp] 317 / 8e-110 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10037164 [exp] 314 / 1e-108 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10040286 [exp] 305 / 4e-105 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10023407 [exp] 305 / 7e-105 AT2G39700 445 / 3e-160 expansin A4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154700 [exp] 358 / 2e-126 AT2G40610 348 / 2e-122 expansin A8 (.1) Potri.019G057500 [exp] 349 / 1e-122 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.006G108000 [exp] 343 / 3e-120 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.016G135200 [exp] 334 / 1e-116 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.008G088300 [exp] 330 / 4e-115 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.010G167200 [exp] 324 / 2e-112 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.001G001100 [exp] 319 / 5e-111 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.013G060800 [exp] 318 / 2e-110 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1) Potri.004G123200 [exp] 318 / 2e-110 AT1G69530 334 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.017G085300 [exp] 310 / 2e-107 AT1G26770 355 / 5e-125 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10042214 pacid=23153587 polypeptide=Lus10042214 locus=Lus10042214.g ID=Lus10042214.BGIv1.0 annot-version=v1.0 ATGGCGGCTCATTTCTCATTCCCTCATTGGATCCTTTTCTTCTCCTCCTTGTTCGTGGCATTCATGTTTGATCGTGCTTCTGCCGGCTACGGCGGCGGCT GGCAGTCCGCTCACGCTACTTTCTACGGCGGCGGCGACTCAGCTGGGACAATGGGGGGAGCGTGCGGATACGGAAATCTGTACAGTCAAGGTTTCGGGAC CAACACCGCTGCGTTGAGCACGGCACTGTTCAACAACGGACTGAGTTGCGGGGCGTGTTTCGAGATGAGGTGTGCGGACGACGCCAAATGGTGCCTTCCT CGTACTATTACGGTCACTGCCACCAACTTCTGCCCGCCCAACCCAGCCTTACCAAACAACGCTGGCGGATGGTGCAACCCGCCGCTCCAACACTTCGACT TGGCCCAACCCGCATTCCTCCAAATCGCCCGATACCGGGCAGGCATTGTTCCCGTCTCATTCCGCAGGGTGCCTTGCTGGAAGAAAGGAGGAATCAGATT TACCATCAACGGCCACACGTACTTCAACCTGGTACTGGTGACCAACGTTGGCGGCGCCGGTGACGTTCATGCGGTTTCCGTCAAAGGTTCGAAAACCGGG TGGCAGTCACTATCAAGGAACTGGGGTCAAAACTGGCAGAGCAACATTTATCTTAACGGTCAAAGTCTCACTTTCTCGGTCACCAACAGTGACGGCAAGA CTGTGACAAGCTACAACGTGGCGCCTTCTGGTTGGCAGTTTGGACAGACTTTTGAAGGCCGCCAATTTTAG
AA sequence Show only first row Show all	>Lus10042214 pacid=23153587 polypeptide=Lus10042214 locus=Lus10042214.g ID=Lus10042214.BGIv1.0 annot-version=v1.0 MAAHFSFPHWILFFSSLFVAFMFDRASAGYGGGWQSAHATFYGGGDSAGTMGGACGYGNLYSQGFGTNTAALSTALFNNGLSCGACFEMRCADDAKWCLP RTITVTATNFCPPNPALPNNAGGWCNPPLQHFDLAQPAFLQIARYRAGIVPVSFRRVPCWKKGGIRFTINGHTYFNLVLVTNVGGAGDVHAVSVKGSKTG WQSLSRNWGQNWQSNIYLNGQSLTFSVTNSDGKTVTSYNVAPSGWQFGQTFEGRQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10042214 [exp]	0	1
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10028508 [exp]	1.0	0.8899
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021048 [exp]	19.1	0.8119
AT3G18180			Glycosyltransferase family 61 ...		Lus10016707 [exp]	20.0	0.8335
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026236 [exp]	21.1	0.7596
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10010509 [exp]	21.2	0.8573
AT1G02460			Pectin lyase-like superfamily ...		Lus10009994 [exp]	22.4	0.8551
AT2G21100			Disease resistance-responsive ...		Lus10027834 [exp]	22.7	0.8423
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10025729 [exp]	24.5	0.8537
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10005885 [exp]	26.8	0.8240
AT1G47980			unknown protein		Lus10037797 [exp]	30.3	0.8222

Compare expression of checked genes

Lus10042214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.