Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008598 [exp] 273 / 9e-95 AT1G55190 44 / 9e-06 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10008600 [exp] 226 / 3e-76 AT1G55190 47 / 7e-07 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10000019 [exp] 112 / 4e-32 ND / Lus10014747 [exp] 40 / 0.0005 AT1G55190 147 / 9e-45 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G027900 [exp] 155 / 4e-48 ND / Potri.005G219100 [exp] 49 / 2e-07 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G043800 [exp] 49 / 3e-07 AT1G55190 136 / 1e-40 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.005G054700 [exp] 42 / 6e-05 AT1G08770 137 / 1e-40 prenylated RAB acceptor 1.E (.1) Potri.002G044000 [exp] 42 / 9e-05 AT1G55190 130 / 4e-38 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10042216 pacid=23153623 polypeptide=Lus10042216 locus=Lus10042216.g ID=Lus10042216.BGIv1.0 annot-version=v1.0 ATGGCAAGTTATGGAGCAACCATCCAACAGAGACAACACAGCAGCAGCACTACCTCCTCCGATATCGACTCACAGCGTGCTGCTGAAGCTGCTGATGCCT CCAATCTCCGACGACCGGAATTCCATCTCGTCTGCCCCTTCAGCATCCCTTCCTCCCCGGAAGCTGCTGCGTTGCAGATCACCAGAAACCTGTCTCATTA CAGTCTCCACTACTTCCACTTTGTATGGATAATATTGTTCATCACCCTCATTCCAGCCAGGAAAGTCTCCTTGATTTACCTGGTTATCACGACTTACGTC GCTTCCCTTTACCTGCTCGTCTTGCACACTTTTCCAGCTTCCTATTTCCTTCACAAGCTCGTTGACAAGCGTCTGGTTTTGACCCTGGTGGTGGTTGCGA CAATGCTGGAGCTCATCTTCACTGAGGGTGGTTTGCATCTTCTCATCACTCTTGCAGCCACCACACCTTTAGTGTTAATTCATTCGGCTTTGTGGATTGG AGATCATCTCATGGCTGGAGAAAAGGAGGCTGCAGAGGACTATCTGCCAATTGCGCAGGAGTCTCCTTGA
AA sequence Show only first row Show all	>Lus10042216 pacid=23153623 polypeptide=Lus10042216 locus=Lus10042216.g ID=Lus10042216.BGIv1.0 annot-version=v1.0 MASYGATIQQRQHSSSTTSSDIDSQRAAEAADASNLRRPEFHLVCPFSIPSSPEAAALQITRNLSHYSLHYFHFVWIILFITLIPARKVSLIYLVITTYV ASLYLLVLHTFPASYFLHKLVDKRLVLTLVVVATMLELIFTEGGLHLLITLAATTPLVLIHSALWIGDHLMAGEKEAAEDYLPIAQESP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Lus10042216 [exp]	0	1
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10008598 [exp]	1.0	0.8667
AT4G27300			S-locus lectin protein kinase ...		Lus10016864 [exp]	2.0	0.8335
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10013150 [exp]	2.8	0.7987
					Lus10025850 [exp]	4.6	0.7647
AT1G31130			unknown protein		Lus10018940 [exp]	4.6	0.8135
AT4G08850			Leucine-rich repeat receptor-l...		Lus10031161 [exp]	6.3	0.7513
AT3G54040			PAR1 protein (.1)		Lus10021114 [exp]	8.7	0.6938
AT5G25930			Protein kinase family protein ...		Lus10005491 [exp]	11.4	0.7384
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10004403 [exp]	12.0	0.7664
AT3G18670			Ankyrin repeat family protein ...		Lus10019888 [exp]	12.8	0.7668

Compare expression of checked genes

Lus10042216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.