Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49400 726 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008595 [exp] 1626 / 0 AT3G49400 771 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10022855 [exp] 49 / 2e-05 AT2G20330 885 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024967 [exp] 48 / 4e-05 AT2G20330 871 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 45 / 0.0003 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10033802 [exp] 44 / 0.0004 AT3G21540 914 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10012475 [exp] 44 / 0.0006 AT3G21540 1094 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G021900 [exp] 899 / 0 AT3G49400 824 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G121100 [exp] 44 / 0.0006 AT3G21540 1246 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10042218 pacid=23153805 polypeptide=Lus10042218 locus=Lus10042218.g ID=Lus10042218.BGIv1.0 annot-version=v1.0 ATGGCGGCTTCCAGATTCCAAGCCGCTTCCTTGGTCGGCGTCCCTTCCTACCCCAACGCCATTGCTTGGTCCGACGACAACTTCATCGCCGTCGCTTCCG GCCACATTGTCACTATTCTCAACCCAGCATTGCCTTGCGGACCTCGCGGCACCATCACGCTTCCTACTGGCAAACATTACCCAATTGGCAGAGTTGAAAA AGCAGATTTGCTCTCGGGAGACTTGCTGCCTGCTGCATTATCACGGGACCGAAGACCATGTGTTAGGTCAATTGCTTGGTCTCCTCTTGGAATGTCTCCT AACTATGGATGTTTGCTTGCAGTCTGTACTGTTGAAGGATTTGTGAAGGTTTATCGTCCACCTTTTTCGGATTTCTCCTCAAACTGGATAGAGGTCATAG ATATATCAGATATGCTGTATGATCATCTTGCAAAGAATAACTTTACGGAGATCGACATCTCTACTCCAGAGATTCCCACTAATGGAAGGTCAAAAGAAGG ATCTTTTAATCGCCTCGAAATTACACGAGTGAGCGGTTACCCAAACTCCATTATAACCAAGCAGTACAAGCGCAGAAAAGTTATTGCTGCTACTTACATG AACATCAATGCTGATAGTTTTGGGGGACGACCGTCTGAACCTAGACATCCAGAGATTACTAATACTAGGTCCACCCGTCACAATATACTGGACTGCAAGA AGTTACCAACAACAAGGCTTGGAAAACTTGGGAAAACTGTCCTGGGGAGCTGTAAATCCCAACTTTTGACATCAAAGGAGTATGCTGCACGTAGTGCTCG GATGACCTCACTTGTTCTCGCGTGGTCTCCGTTATTGGACACAAGCTTAGTTTCTTCACATGATCTATCCAAGAGATACTCCATTCTTGCTGTGGGAGGA AAGTCTGGTAAACTCTCACTCTGGAGAGTTCAGGCACCTCAATGCTATTCAGTTGATCGCAGTAATGCCCCTACCGGTGTGACATTTCTTGGGGTTGTTC AGGCTCACACCTCATGGATCACCGCAGTGAGTTTAGAGTTAATTGTTTCTAACTCTAAGCCACACGTTGTAATGGTTACTGGAAGTACCGATGGAAGTGT GAAGATTTGGCTGGGGAATGTGGAGCAATTTCTTAAGTTTTCGAAAGCCAATAAAGCTCTCTTCGCTCTTCTGGACGAGGTTCTACGTGTAAACTTTGTC CCGATTTCGGCTCTTTCGGTCCTAGTGCCTGCTCAGCCTGTACATAAAATGCTCATAGCAGTTGGCAAAGGATCCGGCTCCTTCGAAATTTGGACATGTG ACACATCCGGCTTCAAATTTGAGAAAGCTGGCTGCCATGATGCTCATGGCTATGCCGTTACAGGTCTAGGTTGGTCTTCGGATGGATATTCTTTATACAG CTGTGGCCAGGATAATTATGTACGCAGCTGGGTCTTACGCGGGAAATCCTTCTCCGAAGTTCCCATTCCTTCGAGCCTTCCTGGTCAAACAGGCTCAGAT GATATTCCTGATGCTTTGCTTTCATGCCTTGGTGTGGCTTCATCTCCTGGAAATCTCATGGTTGCAATGGTCCGCGACTTTGATGTTGAGCTATTAGAGC ATATGTATGAAGCAAGGGCACAAAAGGCCGTAGTTGAATTCTTTTGGATTGGTGGACAATCATCGGAGAGCACAACCAGCGGTTCAACACAGTTTTACCA AGAAACATTTCCAGAATTCCGGCCAAATGAATTGGCTGCTTGGGAGTTTAATACCTTATGGTCTTTGAGACAGTATGAAGATCCAAACAAGCCTTTGGTT GTTTGGGACATCACAACAGCACTGCTGGGTTTCAAAGATCCCATCCCAAAGTATCTCGACTATTTACTCGTCAAATGGCTATCCACAACATTCTTGGGTG GTCAGTACATCAATCGTCCCCTTTCTGAGATCACGAAACGAGTCCTGGAAAGCTTGTCGAAAGCCTCTACCCGCCAGCTGCACCTTCTGAACATCATTAC TAGACGTGTCATCTTGTCTAAGCTGAAGGCTGAGGAAATCAACAACTCCAATGCTTGCGATGATGAGACACTACAGTTCGGTTTTCAGACGTTACTCAGC AGTGAAAGAGAGCTCCGGCAGAGACTCGTAGGACTCAGCTTAGCTGCCAATTCAGCTACAACTTCCTCATCACAAAAACCTGAATCCTGGTCTCCATTTG GTGTCATGCAAATGCAGCAATGGGTTATACTTAACCATGCGAACGTTAAAGATCAACTTAACGTCCTTGCATCACAAGTTCAAAAGCATACAAGAAAAGC AACGGAGCAGTGCACGTTCTGCACGGCCTCGGTTCCTTTCGAATCTCCGGAATCCGCAACCTGCAGTGGTTCGGAGATCGTTGAGGGAGATCTCCAGAGA CATGAAGTTCCAAGATGTGCAGTGTCAATGCAGGTTTGCCCTGCTACACCTCTGTGGTTCTGCAAGTGTTGTCACAGGAAAGTGCACAAGCTGGCTCCAG ATTGTCTATTCAAGATGCCTAGGTTTCCCATGGATTTCACTTCATGGACAGAAGAAGAAGCTTCTCCAGCTCAGAGATCCTCAAGACCCTTCTGTCCATT TTGTGGGATTTTGATGCAGAGATTGCTGCCTGATTTTCTGCTGTCGTCACAGCCGGTATGA
AA sequence Show only first row Show all	>Lus10042218 pacid=23153805 polypeptide=Lus10042218 locus=Lus10042218.g ID=Lus10042218.BGIv1.0 annot-version=v1.0 MAASRFQAASLVGVPSYPNAIAWSDDNFIAVASGHIVTILNPALPCGPRGTITLPTGKHYPIGRVEKADLLSGDLLPAALSRDRRPCVRSIAWSPLGMSP NYGCLLAVCTVEGFVKVYRPPFSDFSSNWIEVIDISDMLYDHLAKNNFTEIDISTPEIPTNGRSKEGSFNRLEITRVSGYPNSIITKQYKRRKVIAATYM NINADSFGGRPSEPRHPEITNTRSTRHNILDCKKLPTTRLGKLGKTVLGSCKSQLLTSKEYAARSARMTSLVLAWSPLLDTSLVSSHDLSKRYSILAVGG KSGKLSLWRVQAPQCYSVDRSNAPTGVTFLGVVQAHTSWITAVSLELIVSNSKPHVVMVTGSTDGSVKIWLGNVEQFLKFSKANKALFALLDEVLRVNFV PISALSVLVPAQPVHKMLIAVGKGSGSFEIWTCDTSGFKFEKAGCHDAHGYAVTGLGWSSDGYSLYSCGQDNYVRSWVLRGKSFSEVPIPSSLPGQTGSD DIPDALLSCLGVASSPGNLMVAMVRDFDVELLEHMYEARAQKAVVEFFWIGGQSSESTTSGSTQFYQETFPEFRPNELAAWEFNTLWSLRQYEDPNKPLV VWDITTALLGFKDPIPKYLDYLLVKWLSTTFLGGQYINRPLSEITKRVLESLSKASTRQLHLLNIITRRVILSKLKAEEINNSNACDDETLQFGFQTLLS SERELRQRLVGLSLAANSATTSSSQKPESWSPFGVMQMQQWVILNHANVKDQLNVLASQVQKHTRKATEQCTFCTASVPFESPESATCSGSEIVEGDLQR HEVPRCAVSMQVCPATPLWFCKCCHRKVHKLAPDCLFKMPRFPMDFTSWTEEEASPAQRSSRPFCPFCGILMQRLLPDFLLSSQPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49400			Transducin/WD40 repeat-like su...		Lus10042218 [exp]	0	1
AT4G21530		APC4	anaphase promoting complex 4, ...		Lus10011250 [exp]	14.7	0.8557
					Lus10026146 [exp]	22.7	0.8402
AT3G09100			mRNA capping enzyme family pro...		Lus10027759 [exp]	32.6	0.8006
AT5G16850		ATTERT	telomerase reverse transcripta...		Lus10026080 [exp]	38.3	0.8272
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10037799 [exp]	86.1	0.7777
AT4G39160	MYB		Homeodomain-like superfamily p...		Lus10040429 [exp]	94.9	0.7774
AT1G18450		ATARP4	actin-related protein 4 (.1)		Lus10032484 [exp]	115.2	0.7975
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10038290 [exp]	121.9	0.7852
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Lus10011299 [exp]	132.6	0.7857
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10018858 [exp]	149.2	0.7756

Compare expression of checked genes

Lus10042218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.