Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62680 100 / 3e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06580 99 / 8e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G64100 96 / 1e-22 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT5G16640 95 / 3e-22 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 95 / 4e-22 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G64583 94 / 4e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63230 91 / 2e-21 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G28010 91 / 7e-21 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 91 / 7e-21 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 91 / 9e-21 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008593 [exp] 230 / 5e-72 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10022861 [exp] 196 / 4e-59 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10024962 [exp] 184 / 9e-55 AT1G62680 346 / 3e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009201 [exp] 178 / 1e-54 AT1G12700 274 / 3e-86 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10003427 [exp] 173 / 7e-52 AT1G12700 291 / 8e-92 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10020134 [exp] 167 / 5e-50 AT1G12700 254 / 3e-78 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014245 [exp] 171 / 1e-49 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10006218 [exp] 164 / 3e-47 AT5G60230 251 / 4e-80 splicing endonuclease 2 (.1.2) Lus10021074 [exp] 161 / 3e-47 AT1G62930 273 / 5e-86 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G025600 [exp] 140 / 3e-38 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G032100 [exp] 135 / 2e-36 AT1G62930 451 / 2e-152 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G038300 [exp] 131 / 7e-35 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G149800 [exp] 129 / 3e-34 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271400 [exp] 127 / 2e-33 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G021200 [exp] 126 / 2e-33 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271200 [exp] 125 / 9e-33 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G257300 [exp] 123 / 4e-32 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242200 [exp] 122 / 7e-32 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242500 [exp] 120 / 4e-31 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10042220 pacid=23153707 polypeptide=Lus10042220 locus=Lus10042220.g ID=Lus10042220.BGIv1.0 annot-version=v1.0 ATGGCGAAGACAATCCTTTTACGTGGAAACGGCTCTCAATTTCAGCTCCTAAGGAAAGTGAGTATGCCTAACTTTTCATTTTCCTCATCGTCTTCAGCAT TGTCAACAACGGCTCTATCCTCTCATTTCCGTTCCAACACTGCTACTCGTCCTACCACTAGTTCTACTCCTTTCACCACTGTTGAAGGCGCCTTGGATTC ATTTAATCGGATGCTATGGATGAATCCCAGGCCTCATATCGCCGAGTTCGGTCAGTTATTCTTATTACTTGTGAAAATGAATGCGTATGGAGCTGCAGTT TCGATGGGTGAAACCAGTGTTGGTCTTAAACTGCTTGAGAATATGGAAGATGGAGGAGGTTGGCCTCCGAATGTTGTTACTTACAATACGATCATGGATA GCCTTTGTAAGGATGGGTTGGTGTCTGAAGCATTAGATGTTTTTCTCAGGATGAAGGATAGAAAATGTTTGCCGAATGTTATAAGTTACAATTGCTTGGC TCATGGTTTATGTCTTTCGAGTCGGAGGAAAGAAGCAATGGCATTGTTGAATGAAATGTTAGAAATGAATGTCTTTCCTGACGTAGTCACTTATAACACT CTGATCAACTACTTTTGCAAAGACGGAATGGTTCTAGAGGCCAAAGCTATAGTTAAACTGATTTTTCAGAATACTGCAACCGGATATCGTCACCTACAAT TCATTGCTGGACGGGTATTGTTTGCGTAG
AA sequence Show only first row Show all	>Lus10042220 pacid=23153707 polypeptide=Lus10042220 locus=Lus10042220.g ID=Lus10042220.BGIv1.0 annot-version=v1.0 MAKTILLRGNGSQFQLLRKVSMPNFSFSSSSSALSTTALSSHFRSNTATRPTTSSTPFTTVEGALDSFNRMLWMNPRPHIAEFGQLFLLLVKMNAYGAAV SMGETSVGLKLLENMEDGGGWPPNVVTYNTIMDSLCKDGLVSEALDVFLRMKDRKCLPNVISYNCLAHGLCLSSRRKEAMALLNEMLEMNVFPDVVTYNT LINYFCKDGMVLEAKAIVKLIFQNTATGYRHLQFIAGRVLFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10042220 [exp]	0	1
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10035028 [exp]	1.7	0.8653
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10028489 [exp]	2.8	0.8605
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10014828 [exp]	4.9	0.8473
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10038628 [exp]	5.2	0.8533
AT1G01020		ARV1	Arv1-like protein (.1.2)		Lus10007219 [exp]	5.3	0.8139
AT5G59980			Polymerase/histidinol phosphat...		Lus10042842 [exp]	8.1	0.8170
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10006128 [exp]	9.7	0.8333
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037616 [exp]	10.2	0.8119
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Lus10017011 [exp]	11.2	0.8262
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10005480 [exp]	11.6	0.8235

Compare expression of checked genes

Lus10042220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.