Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51620 425 / 4e-138 PAP/OAS1 substrate-binding domain superfamily (.1.2) AT3G56320 363 / 3e-117 PAP/OAS1 substrate-binding domain superfamily (.1) AT3G61690 337 / 3e-101 nucleotidyltransferases (.1) AT2G40520 314 / 2e-99 Nucleotidyltransferase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008592 [exp] 993 / 0 AT3G51620 308 / 5e-94 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10022746 [exp] 409 / 3e-133 AT3G51620 659 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10025239 [exp] 409 / 6e-132 AT3G51620 689 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10006095 [exp] 405 / 2e-130 AT3G51620 686 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10030266 [exp] 339 / 2e-108 AT3G61690 640 / 0.0 nucleotidyltransferases (.1) Lus10004018 [exp] 343 / 5e-103 AT3G61690 1098 / 0.0 nucleotidyltransferases (.1) Lus10034219 [exp] 325 / 4e-102 AT3G56320 458 / 1e-154 PAP/OAS1 substrate-binding domain superfamily (.1) Lus10004019 [exp] 331 / 1e-101 AT3G61690 543 / 9e-176 nucleotidyltransferases (.1) Lus10030265 [exp] 341 / 2e-101 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154900 [exp] 499 / 9e-167 AT3G51620 485 / 2e-159 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.019G128800 [exp] 494 / 3e-165 AT3G51620 487 / 2e-160 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.019G056800 [exp] 362 / 1e-115 AT3G56320 535 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1) Potri.015G020400 [exp] 363 / 1e-110 AT3G61690 1025 / 0.0 nucleotidyltransferases (.1) Potri.012G000900 [exp] 357 / 4e-108 AT3G61690 907 / 0.0 nucleotidyltransferases (.1) Potri.014G097600 [exp] 346 / 2e-104 AT3G61690 1198 / 0.0 nucleotidyltransferases (.1) Potri.002G169732 [exp] 345 / 3e-104 AT3G61690 1239 / 0.0 nucleotidyltransferases (.1) Potri.011G116501 [exp] 69 / 7e-14 AT3G61690 82 / 6e-19 nucleotidyltransferases (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042221 pacid=23153609 polypeptide=Lus10042221 locus=Lus10042221.g ID=Lus10042221.BGIv1.0 annot-version=v1.0 ATGGGCGATCTTGACGTCTGCTCAAACGGCGGGAAATTCTTGAGGAGGCCAGACGGCCACTGTTTCGAAGACATGCAGTTACCCTCTACCATGGTGGTTG GTTCGAGGAGCCATGGGAATCCGGATCCTGAATCCATTGCGTTAAAGAATTGGGAGAGAGCCGAAGACGTTGCTCGCGAGATTGTCTGCGGAATCCACCC TACGGTTGAAGCTGATCGTAAGAGACACTGCATCATTCGGTATCTCCAGCTGCTTATCAAGACTTCCCTTGGACTTGAGTTGTTCACATACGGATCGGTT CCATTGAAGACCTATCTACCGGATGGAGATATTGATTTGACGGCATTTAGCTATCCAACTGCAGAGGAGGTGTTGGTTGCTGATGTCTACTCCATCTTGA AAGGGGAAGAGCGCAACAGCAGTGCTAGATATAAAGTGAGGAACGTCCACAAGATAGATGCCGAGGTTAAGCTTATAAAGTGCGATGTGGAAAATATTGT GGTGGACATATCATTCAATCAGTTGGGAGGACTTTGCACCCTATGCTTTCTTGAACAGGTTGATAGGCTTGTTGGCAAAAATCACCTATTTAAGAGAAGC ATTCTTCTGATCAAGGCTTGGTGCTACTACGAGAGCCGGATTCTAGGGGCTCATCACAGTTTAATAGCGACTTATGCCTTGGAGACTCTTGTTCTCTACC TCTTCCATCACTTCCACTTTTCGTTAAATAGCCCTCTGGCGGTTCTTTACAAATTTTTGGATTACTTCAGCACGTTTGACTGGGAGAACTACTGTATTAG CTTGCACGGACCAGTTTGCAAATCTTCCCTGTCCAAGTTTGCTTCGAAGCCACCTGAATGCAGGACGAGAGGGTTATTGTTCAGTGAAGAATTTCTAAAC AAGTGCTTAGATATGTACTCAGTACCATCAGCAAGGCTCGAGACGAGTCCACACACTTTTTCTCAGAAGCATCTTAATATACTTGATCCACTGAAGGAAA ATAACAACCTCGGGCGCAGTGTTAACAAAGGTTTGATGCTGTTATTTATTGTACAAGAGAAAAAGGAGCAATTTTGTATTCTTAACGACGATTCATCTGT TTTCTTCATCATACATCGCTTTGCTGCAGGTAATTTCTATCGAATATGCAGTGCTTTTAAGCACGGAGCCCACAAACTCGGATGTATCCTTCTGCGACCT GAAGAAAACATTGCTGATGAGCTGAAGAAGTTATTCGCAAATTCGTTGGACAGACAATCCGGAGCTTATTGGTCTGATGGTCGAAGTCAATGTTCTTTCT CCATGTTGGATCTAAGTGGAGACTATGGATACCACTTTAGGAGCGTCTTATATGGAAAGTTTTGCCACTTGTGTAGTGCATCTGTAGCTGAAATGTACAA TCCTACCTTGTTGCCCGAGCCAAATCGACTTTCTCACATAAACCTTGATGATATTCCGGATTTGGAGAAATGCAGGGGTAGTCATTTCACAAAGTCTTCT GTTGTTCCTGCCTGTGATGAGAAGAAAATACGGAGAGGAACTGGAACATACATTCCCAAATTGCTGGTCAGTGATGAGCATAATCCGTGCGAAGTAAGGA ATCAGGTCAACCTTGGATCTAATGTTCAATTGGAGGGGGATGGTCCCTTTTGCAGTGTACAGCCAATTATGCAGGAGATAACTCCCCGTGAAGGCCACCA TGTTCTCTCGGAGGTGGAGTATCCACATCTTAATGGTGTGAAGTCGATATCATCTCACGCTCGAGAGTCTAATCCTTTTCCACCGGGATGTTCAAATGCC AACGTTTTCTCTTGGCTAGCGGCAATAACAGATTCTGGATCACAGGCCTCGAATTCTCTAGAATCGACCTCGCCAGATGGGACTGCTGCAACAGACTTGG TGGTGTCAACAGCTTGGGAATGTGTTTCGAGCCCCGGGGTTAGCGTGGAAGGAAGCTGCGAGCCATTTCCAGACAGCACAGTTGAAAGGTTGGAAGAGGA TGATGATGTGGAATTGTATCACCTGAAAGATGAACTTGATTTCCCTCCTCTATCCCACTAA
AA sequence Show only first row Show all	>Lus10042221 pacid=23153609 polypeptide=Lus10042221 locus=Lus10042221.g ID=Lus10042221.BGIv1.0 annot-version=v1.0 MGDLDVCSNGGKFLRRPDGHCFEDMQLPSTMVVGSRSHGNPDPESIALKNWERAEDVAREIVCGIHPTVEADRKRHCIIRYLQLLIKTSLGLELFTYGSV PLKTYLPDGDIDLTAFSYPTAEEVLVADVYSILKGEERNSSARYKVRNVHKIDAEVKLIKCDVENIVVDISFNQLGGLCTLCFLEQVDRLVGKNHLFKRS ILLIKAWCYYESRILGAHHSLIATYALETLVLYLFHHFHFSLNSPLAVLYKFLDYFSTFDWENYCISLHGPVCKSSLSKFASKPPECRTRGLLFSEEFLN KCLDMYSVPSARLETSPHTFSQKHLNILDPLKENNNLGRSVNKGLMLLFIVQEKKEQFCILNDDSSVFFIIHRFAAGNFYRICSAFKHGAHKLGCILLRP EENIADELKKLFANSLDRQSGAYWSDGRSQCSFSMLDLSGDYGYHFRSVLYGKFCHLCSASVAEMYNPTLLPEPNRLSHINLDDIPDLEKCRGSHFTKSS VVPACDEKKIRRGTGTYIPKLLVSDEHNPCEVRNQVNLGSNVQLEGDGPFCSVQPIMQEITPREGHHVLSEVEYPHLNGVKSISSHARESNPFPPGCSNA NVFSWLAAITDSGSQASNSLESTSPDGTAATDLVVSTAWECVSSPGVSVEGSCEPFPDSTVERLEEDDDVELYHLKDELDFPPLSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10042221 [exp]	0	1
AT5G60760			P-loop containing nucleoside t...		Lus10016116 [exp]	2.8	0.7871
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10007202 [exp]	4.9	0.6792
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Lus10014335 [exp]	5.1	0.7495
AT5G54400			S-adenosyl-L-methionine-depend...		Lus10037890 [exp]	9.2	0.7051
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Lus10026044 [exp]	16.4	0.7300
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Lus10041523 [exp]	33.0	0.7079
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10011357 [exp]	38.0	0.6504
AT1G09050			unknown protein		Lus10004495 [exp]	44.3	0.6682
AT5G16220			Octicosapeptide/Phox/Bem1p fam...		Lus10033570 [exp]	50.3	0.6546
AT1G52190			Major facilitator superfamily ...		Lus10037896 [exp]	53.4	0.6355

Compare expression of checked genes

Lus10042221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.