Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47860 547 / 0 Protein of unknown function (DUF1350) (.1) AT3G43540 103 / 2e-24 Protein of unknown function (DUF1350) (.1), Protein of unknown function (DUF1350) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008591 [exp] 743 / 0 AT5G47860 486 / 1e-171 Protein of unknown function (DUF1350) (.1) Lus10009920 [exp] 666 / 0 AT5G47860 612 / 0.0 Protein of unknown function (DUF1350) (.1) Lus10024193 [exp] 610 / 0 AT5G47860 566 / 0.0 Protein of unknown function (DUF1350) (.1) Lus10019508 [exp] 110 / 7e-26 AT1G80770 560 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043354 [exp] 103 / 3e-23 AT1G80770 550 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G158400 [exp] 590 / 0 AT5G47860 605 / 0.0 Protein of unknown function (DUF1350) (.1) Potri.001G072400 [exp] 588 / 0 AT5G47860 578 / 0.0 Protein of unknown function (DUF1350) (.1) Potri.006G217700 [exp] 117 / 8e-29 AT3G43540 494 / 4e-175 Protein of unknown function (DUF1350) (.1), Protein of unknown function (DUF1350) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07082 [flax] [poplar] DUF1350 Protein of unknown function (DUF1350)
Representative CDS sequence Show only first row Show all	>Lus10042222 pacid=23153822 polypeptide=Lus10042222 locus=Lus10042222.g ID=Lus10042222.BGIv1.0 annot-version=v1.0 ATGGTGGGTTGCTTGCAGTTCCAGAGCAATCAGCTACTGGTTCAGTCTCCCCATGGTAAATTCACTGCTTTCTCCGATCACCCTCCTGCTCCTAATCGTC TACAATCACGTCATACGACGACCACCACCAGAATTTATTGCCAGTACGATGATATCAGCAGGAAACCAGCTCAACCCTCTTCTTCTGGAATTCAACTCTA TGGTCAGATTGAGAGGGTACTTACTGAGACTGTGAGACAATCTCAGGATGCTTGGGGTTCTTTGGCTGACTGGACTGAGATTGAGGGAGCATGGGTTCTT AAACCAAAGAATGGAAGGCCTATATCAGTTGTACATTTCATCGGTGGCATATTCGTAGGGGCAGCACCACAACTGGCCTACCGTTTGTTCCTCGAGCACC TTGCAGAGAGGGGTGTGTTGGTGATCGCAACACCATATGCTAGCGGGTTTGACTATTTCCAGATTGCAGATGAAGTTCAGTTCAAATTCGATAGGGCTTT TCGCTTCTTGCAAGATCCTGTGGAAGATCTTCCTACCTTTGGTATTGGTCATTCTTTGGGGTCTGTCATTCACCTTCTGATTGAAAGTGAACTTGCTGCT GTCCAGGATCGCGTTATGCTGTCCAAAGAAGTGGAAGCAAGCGTTGCTATGCCTCTGTTCTCACCTGTTCTTGTACCAATGGCTCAAAGCTTCGGCCCAA TCCTAGCGCAGATAGCTTCGTCTCCAACATTCCGAATGGGGATAGAGAGCATCACCCCTCCTTTCATGAGACAAGCTTTCCCTCTAATAGAGCAGCTTCC TCCTTTGTACATGGACCTGGTCAACGGCAGAGAAGACTTCAGTCCTAAACCCGAAGAGACTCGTCGCCTTATAAAATCATATTATGGGGTCTCCAGAAAC CTTCTAGTAAAGTTCAAGGACGATTCCATCGACGAGACCTTTTCGTTAGCGCAAGTCCTTAGCTCGGAATCAGCTGTTAGCTCCATGATCGACCTGTCAA TCCGATCATTACCAGGAGATCATGGTCTTCCCTTGCAACAGGCTCTCCCGGATGTTCCACCGGCAATGGCGGATGCAGTAAACAGAGGAAGCGAGCTGTT CACGAATCTGGCGGTGGGTACGCCATGGGAGACAGTTGCGAAAGAGGTGGGGTACTCGTTGGGGAGTGACAACCGGATCGTTCGCGCACAAGCCTCCAAG GACTTGGCCAAGCTTGTGGATGTGATCATGGATTGGATGGCCTCAAATGCAGGTCCAAAGATATTAAGACCACGATGA
AA sequence Show only first row Show all	>Lus10042222 pacid=23153822 polypeptide=Lus10042222 locus=Lus10042222.g ID=Lus10042222.BGIv1.0 annot-version=v1.0 MVGCLQFQSNQLLVQSPHGKFTAFSDHPPAPNRLQSRHTTTTTRIYCQYDDISRKPAQPSSSGIQLYGQIERVLTETVRQSQDAWGSLADWTEIEGAWVL KPKNGRPISVVHFIGGIFVGAAPQLAYRLFLEHLAERGVLVIATPYASGFDYFQIADEVQFKFDRAFRFLQDPVEDLPTFGIGHSLGSVIHLLIESELAA VQDRVMLSKEVEASVAMPLFSPVLVPMAQSFGPILAQIASSPTFRMGIESITPPFMRQAFPLIEQLPPLYMDLVNGREDFSPKPEETRRLIKSYYGVSRN LLVKFKDDSIDETFSLAQVLSSESAVSSMIDLSIRSLPGDHGLPLQQALPDVPPAMADAVNRGSELFTNLAVGTPWETVAKEVGYSLGSDNRIVRAQASK DLAKLVDVIMDWMASNAGPKILRPR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47860			Protein of unknown function (D...		Lus10042222 [exp]	0	1
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10034997 [exp]	1.0	0.8784
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10027024 [exp]	3.5	0.8633
AT5G66900			Disease resistance protein (CC...		Lus10034761 [exp]	3.5	0.8709
AT5G01760			ENTH/VHS/GAT family protein (....		Lus10022753 [exp]	3.7	0.8373
AT1G27170			transmembrane receptors;ATP bi...		Lus10020533 [exp]	4.5	0.8487
AT4G24460		CLT2	CRT (chloroquine-resistance tr...		Lus10008964 [exp]	11.5	0.8515
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10004821 [exp]	14.1	0.8487
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10021386 [exp]	14.1	0.8318
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10005420 [exp]	15.7	0.8187
					Lus10037807 [exp]	16.6	0.8263

Compare expression of checked genes

Lus10042222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.