Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58350 556 / 0 ZIK2, WNK4 with no lysine (K) kinase 4 (.1) AT3G51630 543 / 0 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT3G48260 431 / 2e-146 WNK3 with no lysine (K) kinase 3 (.1) AT3G22420 431 / 6e-146 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT3G04910 390 / 3e-128 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT1G49160 377 / 6e-125 WNK7 Protein kinase superfamily protein (.1.2) AT5G28080 375 / 7e-125 WNK9 Protein kinase superfamily protein (.1.2) AT3G18750 360 / 3e-118 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT1G64630 340 / 5e-111 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1) AT5G41990 340 / 2e-110 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008590 [exp] 1003 / 0 AT5G58350 624 / 0.0 with no lysine (K) kinase 4 (.1) Lus10009921 [exp] 716 / 0 AT5G58350 545 / 0.0 with no lysine (K) kinase 4 (.1) Lus10024192 [exp] 710 / 0 AT5G58350 540 / 0.0 with no lysine (K) kinase 4 (.1) Lus10014165 [exp] 511 / 1e-176 AT3G51630 609 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Lus10022747 [exp] 499 / 2e-171 AT3G51630 597 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Lus10010547 [exp] 444 / 1e-149 AT3G04910 620 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10004904 [exp] 436 / 4e-146 AT3G22420 630 / 0.0 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) Lus10041947 [exp] 413 / 2e-138 AT3G48260 612 / 0.0 with no lysine (K) kinase 3 (.1) Lus10017957 [exp] 409 / 5e-132 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G155100 [exp] 634 / 0 AT5G58350 689 / 0.0 with no lysine (K) kinase 4 (.1) Potri.019G128600 [exp] 597 / 0 AT5G58350 662 / 0.0 with no lysine (K) kinase 4 (.1) Potri.016G134600 [exp] 554 / 0 AT3G51630 591 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Potri.013G036300 [exp] 439 / 1e-146 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.012G086700 [exp] 416 / 8e-140 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.015G084600 [exp] 412 / 2e-138 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.005G049800 [exp] 400 / 1e-131 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.010G087900 [exp] 394 / 3e-129 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.008G152300 [exp] 384 / 2e-125 AT3G04910 726 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.005G057300 [exp] 369 / 2e-120 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10042223 pacid=23154031 polypeptide=Lus10042223 locus=Lus10042223.g ID=Lus10042223.BGIv1.0 annot-version=v1.0 ATGCACAGAAACGAGCTCAACTCTCAGCTTCCTGCCGCTGATCATGGTTATGTGGAGACTGATCCTACTGGCCGGTATGGACGGTTCAATGAAGTTCTGG GTAAAGGAGCGATGAAGAAAGTATACAAGGCGATTGACGAATACCTTGGGTTGGAAGTAGCATGGAACCAGGTCAAGCTCAACGAGTTGCTTCGCAGACC GGACGATTTGCAGAGGCTGTACTCAGAGGTCCATCTTCTCAGCACGCTAAACCATCCTTCCATCATCCGGTTCTACACGTCTTGGATAGATACTCACAAG AAGACTTTCAACTTCATCACTGAAATGTTTACTTCCGGGACTCTCAGAGAGTATCGTAGGAAATACCATCGAGTGAGCATTCGAGCTATAAAGAGATGGG CTCGCGAAATCTTACAAGGGCTCGTCTACCTACATGGCCATGATCCTTCAATAATACATAGAGACCTGAAATGTGACAACATCTTTGTCAATGGCCATCT TGGACAAGTGAAGATTGGTGATTTGGGTCTCGCAGCAGTTCTTCGAGACTCCCAGTCAGCTCATAGTGTGATAGGCACCCCTGAGTACATGGCTCCAGAA TTATACGAGGAAGATTACAACGAGTTGGTCGATGTGTACTCATTTGGCATGTGTGTTATGGAGATGTTCACAGCTGAATACCCTTACAGTGAATGCACTA ATCCAGCACAAATATACAAGAAAGTTACCTCAGGGAAGCTACCAGCAGCATACTATCGGCTAGATGACTTGGAAGCGCAGCGATTCATTGGTAAATGCTT AGTTGCTGCTTCAAACAGGGTATCAGCAAAAGATCTGCTGTTAGATCCTTTTCTTGCACCAGATCCTGTCAAAGGGGTTAGAAATCCGACACCTTTCTTG AACCACAAGGAAATGGAGAAACTGCAAGTGGATGATGATGATGATCCACCTAGGACAGATATGACAATCACAGGGAAACTGAACCCTGAAGATGATACCA TCTTTCTTAAAGTTAAGATTGTCAACAAAGACGGTTCTCTTAGGAATGTGTTTTTCCCGTTTGATATTTTGCATGATACTCCAATGAACGTTGCTGTGGA GATGGTAAAAGAGCTGGAGATTGATGATTGGGAACCGCCCGAAATTGCTGGAATGATTGATCAGGCGATTTCAGCTCTGGTGCCTGATTATGAACCCAAC CATAGACCAAACTGTCCGGAGTACGATGAAAATGTCCATCATTCTGGTTCTCCCTCCTCGAGTTCATCGTCCCATGCATCTTTCACAGGGATAACCGTCT GGCCACAAGGGAATTCAAACTCTGAAGGGCAAGGACTTGCAAGAATTGCGTACGAAAACTGCATGGCTTTGCTCGAGTCACAACACAGCAGTCATGGTTC TAGGAACAGATCAAGGGACGTGGACATTCGTAGACTGACAAGGAACCGGTCACTAGTCGACGTTCACAGCCAGTTACTACACCAGTCATTAGTGGAGGAG GTGAACAAGAGGCGACTTTTCAACACTGTTGGAGCTGTGGAGAACATTGGGTTTCAGGCACCTCCTGATGTTTCTGAAAGGCGGTCACAACATATGTCAA GAAGAAACTGGAAATAA
AA sequence Show only first row Show all	>Lus10042223 pacid=23154031 polypeptide=Lus10042223 locus=Lus10042223.g ID=Lus10042223.BGIv1.0 annot-version=v1.0 MHRNELNSQLPAADHGYVETDPTGRYGRFNEVLGKGAMKKVYKAIDEYLGLEVAWNQVKLNELLRRPDDLQRLYSEVHLLSTLNHPSIIRFYTSWIDTHK KTFNFITEMFTSGTLREYRRKYHRVSIRAIKRWAREILQGLVYLHGHDPSIIHRDLKCDNIFVNGHLGQVKIGDLGLAAVLRDSQSAHSVIGTPEYMAPE LYEEDYNELVDVYSFGMCVMEMFTAEYPYSECTNPAQIYKKVTSGKLPAAYYRLDDLEAQRFIGKCLVAASNRVSAKDLLLDPFLAPDPVKGVRNPTPFL NHKEMEKLQVDDDDDPPRTDMTITGKLNPEDDTIFLKVKIVNKDGSLRNVFFPFDILHDTPMNVAVEMVKELEIDDWEPPEIAGMIDQAISALVPDYEPN HRPNCPEYDENVHHSGSPSSSSSSHASFTGITVWPQGNSNSEGQGLARIAYENCMALLESQHSSHGSRNRSRDVDIRRLTRNRSLVDVHSQLLHQSLVEE VNKRRLFNTVGAVENIGFQAPPDVSERRSQHMSRRNWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10042223 [exp]	0	1
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10008590 [exp]	1.4	0.9312
AT2G28410			unknown protein		Lus10021476 [exp]	3.5	0.9319
AT4G21215			unknown protein		Lus10020063 [exp]	5.9	0.8622
AT3G47510			unknown protein		Lus10019094 [exp]	6.0	0.8621
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Lus10039978 [exp]	8.3	0.9174
AT5G02640			unknown protein		Lus10009066 [exp]	10.0	0.9131
AT1G31130			unknown protein		Lus10028643 [exp]	11.6	0.9032
AT3G24460			Serinc-domain containing serin...		Lus10033091 [exp]	12.4	0.8521
AT3G51380		IQD20	IQ-domain 20 (.1)		Lus10041844 [exp]	19.5	0.8007
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10002812 [exp]	21.6	0.8801

Compare expression of checked genes

Lus10042223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.