Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58360 109 / 2e-27 OFP ATOFP3, OFP3 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, ovate family protein 3 (.1) AT1G06920 100 / 1e-23 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) AT2G30400 96 / 3e-22 OFP ATOFP2, OFP2 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, ovate family protein 2 (.1) AT5G01840 89 / 3e-20 OFP AtOFP1 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) AT4G18830 87 / 5e-19 OFP ATOFP5, OFP5 ovate family protein 5 (.1) AT5G19650 76 / 5e-16 OFP ATOFP8, OFP8 ovate family protein 8 (.1) AT2G18500 77 / 1e-15 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) AT3G52525 70 / 3e-14 OFP ATOFP6, OFP6 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) AT2G36026 64 / 8e-12 OFP Ovate family protein (.1) AT5G22240 61 / 8e-11 OFP ATOFP10, OFP10 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 10, Ovate family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008589 [exp] 520 / 0 AT5G01840 120 / 6e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10006092 [exp] 109 / 6e-27 AT5G01840 121 / 5e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10025241 [exp] 102 / 2e-24 AT1G06920 112 / 2e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10014164 [exp] 96 / 4e-23 AT1G06920 104 / 3e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10015236 [exp] 91 / 6e-20 AT4G18830 112 / 1e-27 ovate family protein 5 (.1) Lus10011092 [exp] 87 / 4e-19 AT5G19650 99 / 3e-24 ovate family protein 8 (.1) Lus10043243 [exp] 86 / 9e-19 AT5G19650 105 / 4e-27 ovate family protein 8 (.1) Lus10041730 [exp] 78 / 5e-16 AT2G18500 134 / 3e-37 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Lus10021302 [exp] 72 / 2e-14 AT3G52525 120 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G155200 [exp] 194 / 4e-58 AT1G06920 130 / 3e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.019G128500 [exp] 189 / 1e-56 AT1G06920 129 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.006G107700 [exp] 122 / 4e-31 AT1G06920 116 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.016G134200 [exp] 105 / 3e-25 AT1G06920 117 / 1e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.004G062100 [exp] 99 / 8e-23 AT4G18830 104 / 9e-25 ovate family protein 5 (.1) Potri.018G080100 [exp] 81 / 6e-17 AT5G19650 107 / 8e-28 ovate family protein 8 (.1) Potri.006G156176 [exp] 80 / 7e-17 AT5G19650 104 / 8e-27 ovate family protein 8 (.1) Potri.002G262500 [exp] 80 / 1e-16 AT5G19650 94 / 2e-22 ovate family protein 8 (.1) Potri.005G125200 [exp] 80 / 2e-16 AT2G18500 111 / 7e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.007G028000 [exp] 77 / 1e-15 AT2G18500 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [flax] [poplar] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Lus10042224 pacid=23153845 polypeptide=Lus10042224 locus=Lus10042224.g ID=Lus10042224.BGIv1.0 annot-version=v1.0 ATGTCAGCAGCTGATCATGTCGCAATTTATATACTTTCACCCTTTAGCCTTTCCCCCCTGGTAATCAAACCCCCCCATTCTGTACTCTCCATCAAAAACC CAATTCAGAAACCAGAAGATATGGGAATCAAACACAGGTTCAGATTATCAGACATGATCCCAAATGCCTGGTTTTACAAGCTCAAAGACAACATGTCCAA ACCCAGAAACACAACTTCTTCTTTTGATCATAAGTTCATCAAGAGGAACAGGATCAAAAAGCAGCAGCCTTTCTCCTCCAATTCACTATCCAGGAGTACT AATAAGCCTCCTCCTCCTCCTTCTTCTTCACAGCCAGGATGCTCGTCCTACTTCGTTTCGTCTAAGCCCGAAAAAGCTACTACTGATCATCATCATAAGT TGTACAATTCACCGGTGAACCCAAAGGCATCTGACACTCAGTTTCCTGATCAGCCAAGGAGAAGCAGCAGCAGCAGCAGGCGAAGGAAGACCATTTACAA GCCTTCTCCAAAGCTTCATCGTCATATTCACTATTCCCCTACTGACTACAACAACTACTCCAGCTCGCCATTCGAATCCTCCATCTTAACAGAATCCGAA GACGAATATGATGATGAAATTGGCGTTAATGCTAAATCATGGTCCACGCCAGACATCATCATTGATGTGAAAGATCATTCCCTTGAGGTTGAACCCCTTC CTCCAATCATGACAAGGCCAAGGAATAAGTCACATCATGACACGGGGCGAAAATCGACAACGAAGAAGAGGTCGATAAGGGTCAAGTCCAACTCTCCAAG GCTTGCTAGAAGGAAATCCAAGGGTGTGCCATCTTATCCATCGCCATTAGGCAGGAGGAGATGCAGGGCGTTTGCTGAGAGCTTTGCAGTGGTGAAGTCA TCGATGGATCCGGAGAGGGACTTCATGGATTCGATGGTGGAGATGATCGTGGAGAACGACATCAAGGGTGCTAAGGAGCTGGAGGAACTTCTTGCCTGCT ACCTTTCCCTCAATTTGGACAAGTACCATGATGTTATAGTCAGAGCATTTGAGCAAATCTGGTTCCACATGGCTTAA
AA sequence Show only first row Show all	>Lus10042224 pacid=23153845 polypeptide=Lus10042224 locus=Lus10042224.g ID=Lus10042224.BGIv1.0 annot-version=v1.0 MSAADHVAIYILSPFSLSPLVIKPPHSVLSIKNPIQKPEDMGIKHRFRLSDMIPNAWFYKLKDNMSKPRNTTSSFDHKFIKRNRIKKQQPFSSNSLSRST NKPPPPPSSSQPGCSSYFVSSKPEKATTDHHHKLYNSPVNPKASDTQFPDQPRRSSSSSRRRKTIYKPSPKLHRHIHYSPTDYNNYSSSPFESSILTESE DEYDDEIGVNAKSWSTPDIIIDVKDHSLEVEPLPPIMTRPRNKSHHDTGRKSTTKKRSIRVKSNSPRLARRKSKGVPSYPSPLGRRRCRAFAESFAVVKS SMDPERDFMDSMVEMIVENDIKGAKELEELLACYLSLNLDKYHDVIVRAFEQIWFHMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01840	OFP	AtOFP1	ARABIDOPSIS THALIANA OVATE FAM...		Lus10042224 [exp]	0	1
					Lus10018463 [exp]	5.0	0.8799
					Lus10010925 [exp]	7.3	0.8345
AT4G35170			Late embryogenesis abundant (L...		Lus10022644 [exp]	7.5	0.8674
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10017296 [exp]	7.7	0.8453
AT5G53200	MYB	TRY	TRIPTYCHON, Homeodomain-like s...		Lus10038822 [exp]	8.1	0.8085
AT4G15620			Uncharacterised protein family...		Lus10012562 [exp]	8.1	0.8619
AT1G17140		RIP1, ICR1	ROP INTERACTIVE PARTNER 1, int...		Lus10013708 [exp]	8.5	0.8685
AT5G48905		LCR12	low-molecular-weight cysteine-...		Lus10017233 [exp]	10.4	0.8522
AT5G01840	OFP	AtOFP1	ARABIDOPSIS THALIANA OVATE FAM...		Lus10008589 [exp]	10.4	0.7914
AT4G38380			MATE efflux family protein (.1...		Lus10020203 [exp]	13.3	0.8463

Compare expression of checked genes

Lus10042224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.